Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS21525 and HSERO_RS21530 are separated by 247 nucleotidesHSERO_RS21530 and HSERO_RS21535 are separated by 183 nucleotidesHSERO_RS21535 and HSERO_RS21540 are separated by 162 nucleotidesHSERO_RS21540 and HSERO_RS21545 are separated by 356 nucleotides HSERO_RS21525: HSERO_RS21525 - alpha/beta hydrolase, at 4,925,196 to 4,925,858 _RS21525 HSERO_RS21530: HSERO_RS21530 - cytochrome C550, at 4,926,106 to 4,927,260 _RS21530 HSERO_RS21535: HSERO_RS21535 - NADH dehydrogenase, at 4,927,444 to 4,929,045 _RS21535 HSERO_RS21540: HSERO_RS21540 - alkyl hydroperoxide reductase subunit C, at 4,929,208 to 4,929,771 _RS21540 HSERO_RS21545: HSERO_RS21545 - thioesterase, at 4,930,128 to 4,930,580 _RS21545
Group Condition HSERO_RS21525 HSERO_RS21530 HSERO_RS21535 HSERO_RS21540 HSERO_RS21545
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.3 -0.2 -2.3 -0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 -1.9 -0.6 -0.9 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -0.0 -1.1 -2.4 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -1.6 -0.3 -1.7 -0.2
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.0 -0.7 -0.2 -2.0 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -1.9 -0.2 -0.4 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 +0.4 -0.9 -2.9 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 -1.7 -0.2 -1.6 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -1.7 -0.6 -1.0 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 -1.9 -0.5 -0.6 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -1.4 -0.5 -0.5 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.8 -1.2 -0.5 -1.3 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -2.6 -0.4 -1.0 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -1.3 -0.4 -1.8 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -1.9 -0.3 -0.6 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -2.3 +0.2 -0.5 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 -2.1 -0.4 -1.8 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -1.4 -0.5 -1.1 +0.3
agar plate interaction control Taped volatile agar plate with no fungus +0.7 -0.3 -1.3 -2.0 -0.2
carbon source D-Gluconic Acid (C) -2.5 +0.0 -0.4 +1.0 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.8 -1.6 -0.1 -0.7 -0.6
carbon source D-Gluconic Acid (C) -2.9 +0.3 -0.2 +0.9 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 -2.0 -0.4 -0.2 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.1 -1.5 -0.3 -0.8 -0.1
stress Cobalt chloride 0.2 mM +0.8 -2.3 -0.4 -0.1 +0.5
stress nitrate 200 mM -0.2 -3.3 -0.1 +2.1 +0.1
stress Nickel (II) chloride 0.6 mM +0.8 -2.1 -0.8 +0.8 -0.2
stress Cisplatin 0.003 mg/ml +0.9 -2.4 -0.3 +1.9 +0.2
carbon source L-Arabinose (C) +0.5 +0.7 -1.0 +1.3 -0.1
stress sodium fluoride 100 mM +0.9 -0.3 -0.3 +2.2 +0.3
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