Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS21245	HSERO_RS21250	HSERO_RS21255	HSERO_RS21260	HSERO_RS21265
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.1	+0.1	-1.0	-1.3
micoeukaryotes	Dictyostellum sp.mixed culture-2	-0.4	+0.0	-0.6	-0.2	-0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	-0.0	-0.5	+0.3	-0.6
stress	A22 0.04 mg/ml	-0.3	-0.3	-0.8	+0.3	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	-0.1	-0.0	-1.0	+0.5
micoeukaryotes	C.elegans, mixed culture-2	-0.2	+0.1	-0.5	-0.5	+0.2
carbon source	L-Arabinose (C)	+0.1	-0.1	-0.0	+0.4	-1.1
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.2	+0.0	-1.0	+0.3	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.2	-0.5	+0.3	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.2	+0.2	+0.6	-0.4	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.1	+0.5	-1.0	+0.2
agar plate interaction control	Taped volatile agar plate with no fungus	-0.4	+0.4	-0.3	+0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.7	+0.1	+0.2	-0.5	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.2	+0.6	-0.1	-0.3	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+0.3	-0.2	-0.4	+0.2
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.2	+0.7	-0.2	-0.3	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.8	+0.5	-0.4	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6	+0.5	+0.2	-0.3	-0.1
carbon source	D-Lactate (C)	+0.5	-0.2	+0.2	-0.2	-0.6
carbon source	D-Mannose (C)	+0.6	-0.2	+0.3	-0.4	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.0	+0.9	-0.0	+0.1	-0.6
carbon source	Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM	+0.1	-0.1	+0.2	-0.5	+0.7
carbon source	Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM	+0.3	-0.1	+0.2	-0.5	+0.5
vitamin	With vitamins t2	+0.1	+0.6	-0.1	-0.4	+0.5
supernatant control	Vogels_fungal_media; pH 5.5	-0.4	+0.1	-0.1	+0.2	+1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+1.3	+0.0	-0.2	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+1.0	+0.5	-0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+0.5	+0.0	+0.4	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	+0.7	+0.5	-0.2	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5	+1.4	-0.0	+0.1	-0.1