Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 244 experiments or choose conditions or try the comparative fitness browser

500 ntHSERO_RS20935 and HSERO_RS20940 are separated by 7 nucleotidesHSERO_RS20940 and HSERO_RS20945 are separated by 307 nucleotidesHSERO_RS20945 and HSERO_RS20950 are separated by 223 nucleotidesHSERO_RS20950 and HSERO_RS20955 are separated by 73 nucleotides HSERO_RS20935: HSERO_RS20935 - hypothetical protein, at 4,790,759 to 4,791,307 _RS20935 HSERO_RS20940: HSERO_RS20940 - hypothetical protein, at 4,791,315 to 4,791,740 _RS20940 HSERO_RS20945: HSERO_RS20945 - RNA-binding protein, at 4,792,048 to 4,794,399 _RS20945 HSERO_RS20950: HSERO_RS20950 - peptidyl-tRNA hydrolase, at 4,794,623 to 4,795,201 _RS20950 HSERO_RS20955: HSERO_RS20955 - thiol:disulfide interchange protein, at 4,795,275 to 4,796,042 _RS20955
Group Condition HSERO_RS20935 HSERO_RS20940 HSERO_RS20945 HSERO_RS20950 HSERO_RS20955
stress Cisplatin 0.003 mg/ml +0.3 -0.6 -1.7 N.D. -0.3
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -0.3 -0.1 -1.0 N.D. -0.5
stress Lomefloxacin 0.012 mM +0.1 +0.1 -0.7 N.D. -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 -0.3 -0.8 N.D. -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.0 -0.3 -0.6 N.D. -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 +0.0 -0.4 N.D. -0.8
stress Sisomicin 0.125 mg/ml -0.2 +0.2 -0.8 N.D. -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 -0.8 -0.4 N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.0 +0.2 -0.7 N.D. -0.6
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days -0.5 +0.2 -0.7 N.D. +0.0
stress Fusidic 0.025 mg/ml -0.2 -0.5 -0.5 N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 -0.4 -0.3 N.D. -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.2 +0.1 -0.6 N.D. -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.2 +0.1 -0.7 N.D. -0.6
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -0.4 +0.4 -0.8 N.D. -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.0 +0.3 -0.5 N.D. -0.6
stress nitrate 200 mM -0.0 +0.4 -0.6 N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.9 -0.1 -0.6 N.D. -0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -0.4 -0.4 N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.2 +0.4 -0.2 N.D. -0.6
carbon source D-Galactose (C) -0.5 +0.5 -0.5 N.D. +0.4
supernatant control Vogels_fungal_media; pH 5.5 +0.3 -0.4 -0.6 N.D. +0.7
agar plate interaction control Taped volatile agar plate with no fungus -0.0 -0.6 -0.1 N.D. +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 -0.6 -0.5 N.D. +1.1
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.6 -0.5 N.D. +0.2
vitamin With vitamins t2 +0.1 -0.2 -0.3 N.D. +0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.3 -0.2 -0.3 N.D. -0.1
carbon source D-Galacturonic Acid (C) +0.2 +0.1 -0.3 N.D. +0.8
control NoPredeControl +0.6 +0.3 +0.4 N.D. +0.1
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +0.4 +0.3 +0.3 N.D. +0.9
remove
HSERO_RS20935
plot		 remove
HSERO_RS20940
plot		 remove
HSERO_RS20945		 remove
HSERO_RS20950
plot		 remove
HSERO_RS20955
plot