Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS20860	HSERO_RS20865	HSERO_RS20870	HSERO_RS20875	HSERO_RS20880
stress	A22 0.04 mg/ml	-0.4	+0.2	-0.1	-1.5	-0.1
stress	Cobalt chloride 0.2 mM	-0.8	-0.3	-0.0	-0.2	-0.1
stress	Chloride stress	-0.1	+0.2	-0.0	-1.0	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+0.1	+0.1	-0.5	-0.4
carbon source	D,L-Lactate (C)	-0.4	-0.0	+0.2	-0.4	-0.3
stress	Chloride stress	+0.1	-0.0	+0.1	-1.1	-0.1
stress	Fusidic 0.025 mg/ml	-0.5	-0.0	-0.3	+0.3	-0.4
carbon source	m-Inositol (C)	-0.4	-0.0	+0.3	-0.1	-0.4
stress	Cisplatin 0.003 mg/ml	+0.5	-0.3	-0.1	-0.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	+0.2	+0.3	-0.1	-0.7
stress	Nickel (II) chloride 0.6 mM	-1.2	+0.1	+0.3	+0.2	+0.3
vitamin	No vitamins t2	-0.7	-0.0	+0.3	-0.3	+0.6
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.2	-0.4	-0.2	+0.5	-0.4
stress	sodium fluoride 100 mM	+0.5	-0.7	-0.2	+0.2	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	-0.7	+0.3	+0.1	+0.0
control	NoPredeControl	-0.4	+0.4	-0.4	+0.4	+0.3
stress	Sisomicin 0.125 mg/ml	+0.7	-0.2	-0.2	+0.4	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	+0.8	+0.1	-0.0	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	+0.8	-0.1	-0.2	+0.1
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.7	-0.4	+0.6	-0.1	-0.2
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.8	+0.2	+0.2	-0.2	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.6	-0.1	-0.2	+0.5	-0.1
carbon source	Carbon source 2-Deoxy-D-Ribose 5 mM	+1.1	-0.2	+0.1	-0.3	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-0.2	+1.0	+0.1	+0.0
carbon source	Carbon source 2-Deoxy-D-Ribose 5 mM	+1.0	+0.1	-0.1	-0.3	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	+0.3	+0.3	+0.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	+0.7	+0.2	+0.1	+0.6
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 8 days	-0.2	+1.3	+0.1	+0.1	+0.0
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 8 days	-0.2	+1.3	+0.1	+0.2	-0.0
agar plate interaction control	Taped volatile agar plate with no fungus	+0.3	+0.5	+0.3	+0.0	+0.4