Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 244 experiments or choose conditions or try the comparative fitness browser

500 ntHSERO_RS20805 and HSERO_RS20810 are separated by 297 nucleotidesHSERO_RS20810 and HSERO_RS20815 are separated by 37 nucleotidesHSERO_RS20815 and HSERO_RS20820 are separated by 61 nucleotidesHSERO_RS20820 and HSERO_RS20825 are separated by 1 nucleotides HSERO_RS20805: HSERO_RS20805 - methyltransferase, at 4,763,062 to 4,764,006 _RS20805 HSERO_RS20810: HSERO_RS20810 - amidophosphoribosyltransferase, at 4,764,304 to 4,765,029 _RS20810 HSERO_RS20815: HSERO_RS20815 - tRNA methyltransferase, at 4,765,067 to 4,765,549 _RS20815 HSERO_RS20820: HSERO_RS20820 - ABC transporter ATP-binding protein, at 4,765,611 to 4,766,405 _RS20820 HSERO_RS20825: HSERO_RS20825 - ABC transporter permease, at 4,766,407 to 4,767,300 _RS20825
Group Condition HSERO_RS20805 HSERO_RS20810 HSERO_RS20815 HSERO_RS20820 HSERO_RS20825
carbon source D-Galactose (C) N.D. -0.6 +0.5 -4.1 -3.8
carbon source L-Fucose (C) N.D. +0.0 -0.9 -4.2 -2.3
carbon source D-Xylose (C) N.D. -1.1 +0.1 -4.3 -2.0
carbon source L-Arabinose (C) N.D. -0.2 +0.2 -4.4 -2.9
carbon source D-Lactate (C) N.D. -0.2 -0.4 -4.4 -1.9
carbon source D-Lactate (C) N.D. +0.3 -0.6 -4.5 -2.0
carbon source D-Glucose (C) N.D. -0.2 +0.3 -4.3 -2.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.5 +0.2 -4.4 -1.0
carbon source L-Lactate (C) N.D. -0.2 +0.3 -3.0 -2.5
carbon source m-Inositol (C) N.D. +0.0 -0.4 -4.3 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.0 +0.2 -3.8 -1.6
control NoPredeControl N.D. -0.0 -1.1 -4.0 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.4 +0.0 -4.3 -0.2
carbon source L-Asparagine (C) N.D. -0.1 -0.2 -3.1 -1.3
carbon source L-Rhamnose (C) N.D. -0.1 +0.4 -4.3 -0.6
carbon source Xylitol (C) N.D. -0.4 -0.3 -0.6 -3.2
stress sodium fluoride 100 mM N.D. -0.1 +0.0 -4.1 -0.2
carbon source L-Rhamnose (C) N.D. -0.1 -0.4 -3.0 -0.8
carbon source L-Asparagine (C) N.D. -0.0 -0.0 -2.8 -1.4
carbon source D-Ribose (C) N.D. -0.3 -0.2 -2.2 -1.5
carbon source L-Fucose (C) N.D. -0.0 +0.2 -2.1 -2.1
carbon source D,L-Lactate (C) N.D. -0.4 -0.0 -2.3 -1.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.1 +0.0 -4.2 +0.6
carbon source D-Ribose (C) N.D. -0.2 +0.1 -1.6 -2.1
carbon source D-Mannose (C) N.D. -0.5 +0.2 -2.6 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.2 +0.5 -3.8 -0.0
stress Lomefloxacin 0.012 mM N.D. -0.5 +0.1 -3.1 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.3 +0.8 -2.1 -1.3
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. +0.1 +0.2 -1.4 +4.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.5 +2.3 +1.8 +0.2
remove
HSERO_RS20805
plot		 remove
HSERO_RS20810
plot		 remove
HSERO_RS20815		 remove
HSERO_RS20820
plot		 remove
HSERO_RS20825
plot