Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS20535 and HSERO_RS20540 are separated by 129 nucleotidesHSERO_RS20540 and HSERO_RS20545 are separated by 30 nucleotidesHSERO_RS20545 and HSERO_RS20550 are separated by 10 nucleotidesHSERO_RS20550 and HSERO_RS20555 are separated by 1 nucleotides HSERO_RS20535: HSERO_RS20535 - LysR family transcriptional regulator, at 4,710,144 to 4,711,061 _RS20535 HSERO_RS20540: HSERO_RS20540 - LamB/YcsF family protein, at 4,711,191 to 4,711,949 _RS20540 HSERO_RS20545: HSERO_RS20545 - hypothetical protein, at 4,711,980 to 4,712,228 _RS20545 HSERO_RS20550: HSERO_RS20550 - acetyl-CoA carboxylase biotin carboxylase subunit, at 4,712,239 to 4,713,627 _RS20550 HSERO_RS20555: HSERO_RS20555 - allophanate hydrolase, at 4,713,629 to 4,714,528 _RS20555
Group Condition HSERO_RS20535 HSERO_RS20540 HSERO_RS20545 HSERO_RS20550 HSERO_RS20555
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 -0.8 -1.0 +0.4 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 +0.4 -0.9 -0.5 -0.0
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.2 -1.2 -0.4 +0.2 +0.4
carbon source L-Arabinose (C) +0.2 +0.4 -0.6 -0.6 -0.4
plant Control soil assay; outgrowth in LB +0.5 -0.9 -0.0 -0.0 -0.5
stress nitrate 200 mM -0.4 +0.3 -0.5 +0.1 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 -0.3 -0.7 -0.0 -0.2
carbon source L-Lactate (C) +0.3 -0.4 -0.5 -0.3 +0.2
carbon source L-Rhamnose (C) +0.5 -0.6 -0.2 -0.5 +0.3
carbon source D-Ribose (C) +0.2 -0.3 -0.7 -0.1 +0.4
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.3 -0.1 -0.5 +0.5 -0.5
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.7 -0.1 -0.3 +0.2 -0.6
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM +0.3 -0.9 +0.5 +0.1 -0.0
carbon source m-Inositol (C) -0.3 +0.6 -0.4 -0.2 +0.4
agar plate interaction control Taped volatile agar plate with no fungus -0.4 +0.2 +0.9 -0.1 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 -0.3 -0.4 +0.5 +0.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -0.5 -0.5 +0.7 +0.3 +0.5
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.6 -0.9 +0.4 +0.2
plant Control soil assay; outgrowth in LB +0.3 +0.2 +0.5 +0.2 -0.6
control NoPredeControl +0.3 +0.3 -0.6 +0.1 +0.6
stress Cobalt chloride 0.2 mM -0.5 +0.2 +0.6 +0.0 +0.3
carbon source D-Gluconic Acid (C) +0.5 -0.4 +0.6 -0.0 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.8 +0.3 +0.1 -0.1 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.1 -0.4 +0.0 +0.1 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +0.4 -0.2 +0.2 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 -0.5 +1.9 +0.0 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 +0.1 +2.4 -0.3 -0.4
carbon source D,L-Lactate (C) +0.2 +0.6 +0.4 +0.1 +0.4
carbon source pyruvate (C) +0.6 +0.4 +0.5 +0.0 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.1 +0.4 +1.8 +0.1 +0.1
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