Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS20345 and HSERO_RS20350 are separated by 44 nucleotidesHSERO_RS20350 and HSERO_RS20355 are separated by 29 nucleotidesHSERO_RS20355 and HSERO_RS20360 are separated by 9 nucleotidesHSERO_RS20360 and HSERO_RS20365 are separated by 47 nucleotides HSERO_RS20345: HSERO_RS20345 - histidinol dehydrogenase, at 4,662,025 to 4,663,341 _RS20345 HSERO_RS20350: HSERO_RS20350 - ATP phosphoribosyltransferase (EC 2.4.2.17) (from data), at 4,663,386 to 4,664,036 _RS20350 HSERO_RS20355: HSERO_RS20355 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 4,664,066 to 4,665,316 _RS20355 HSERO_RS20360: HSERO_RS20360 - cell division protein BolA, at 4,665,326 to 4,665,562 _RS20360 HSERO_RS20365: HSERO_RS20365 - metal-dependent hydrolase, at 4,665,610 to 4,666,374 _RS20365
Group Condition HSERO_RS20345 HSERO_RS20350 HSERO_RS20355 HSERO_RS20360 HSERO_RS20365
carbon source L-Proline (C) -7.4 -7.1 -4.2 N.D. -0.7
carbon source L-Malic (C) -6.6 -6.5 -4.0 N.D. -1.0
carbon source D,L-Malic Acid (C) -7.3 -7.3 -2.5 N.D. -0.6
carbon source L-Malic (C) -5.5 -7.2 -3.9 N.D. -1.1
carbon source L-Proline (C) -6.7 -6.6 -3.3 N.D. -1.0
carbon source L-Glutamine (C) -6.0 -6.9 -3.5 N.D. -1.2
stress Chloride stress -7.4 -6.4 -2.8 N.D. -0.9
supernatant control Vogels_fungal_media; pH 5.5 -4.6 -8.0 -3.3 N.D. -1.3
carbon source D-Galactose (C) -6.3 -6.9 -2.9 N.D. -0.9
carbon source a-Ketoglutaric (C) -5.2 -7.2 -4.1 N.D. -0.4
carbon source L-Asparagine (C) -6.0 -7.3 -2.5 N.D. -1.0
carbon source D-Galacturonic Acid (C) -6.0 -6.2 -3.6 N.D. -0.9
carbon source L-Glutamine (C) -6.3 -6.0 -3.4 N.D. -1.1
carbon source D,L-Malic Acid (C) -7.1 -7.0 -1.9 N.D. -0.8
carbon source D-Galactose (C) -6.2 -6.8 -2.5 N.D. -1.4
carbon source succinate (C) -5.8 -5.6 -4.2 N.D. -1.0
carbon source succinate (C) -5.2 -6.8 -3.5 N.D. -0.9
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -6.0 -7.2 -2.4 N.D. -0.6
carbon source L-Arabinose (C) -6.6 -6.2 -2.2 N.D. -1.1
carbon source pyruvate (C) -6.5 -6.4 -2.3 N.D. -0.9
carbon source a-Ketoglutaric (C) -5.9 -7.1 -2.4 N.D. -0.5
carbon source D-Lactate (C) -5.6 -5.2 -4.4 N.D. -0.4
carbon source L-Rhamnose (C) -7.3 -6.2 -1.8 N.D. -0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -6.5 -6.2 -2.4 N.D. -0.4
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days -5.2 -6.4 -2.1 N.D. -1.6
nitrogen source L-Proline (N) -5.8 -7.1 -2.2 N.D. -0.2
carbon source D-Galactose (C) -6.3 -6.4 -2.0 N.D. -0.5
carbon source D-Lactate (C) -6.1 -6.0 -2.3 N.D. -0.8
carbon source D-Sorbitol (C) -5.7 -6.6 -2.1 N.D. -0.8
carbon source L-Arabinose (C) -5.9 -5.1 -3.5 N.D. -0.7
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