Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS20310 and HSERO_RS20315 overlap by 4 nucleotidesHSERO_RS20315 and HSERO_RS20320 are separated by 1 nucleotidesHSERO_RS20320 and HSERO_RS20325 are separated by 76 nucleotidesHSERO_RS20325 and HSERO_RS20330 are separated by 61 nucleotides HSERO_RS20310: HSERO_RS20310 - phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data), at 4,656,590 to 4,657,090 _RS20310 HSERO_RS20315: HSERO_RS20315 - imidazole glycerol phosphate synthase, at 4,657,087 to 4,657,851 _RS20315 HSERO_RS20320: HSERO_RS20320 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data), at 4,657,853 to 4,658,650 _RS20320 HSERO_RS20325: HSERO_RS20325 - IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data), at 4,658,727 to 4,659,365 _RS20325 HSERO_RS20330: HSERO_RS20330 - imidazoleglycerol-phosphate dehydratase, at 4,659,427 to 4,660,023 _RS20330
Group Condition HSERO_RS20310 HSERO_RS20315 HSERO_RS20320 HSERO_RS20325 HSERO_RS20330
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -8.2 -6.8 -5.5 -5.3 -7.1
carbon source L-Malic (C) -7.6 -6.8 -6.1 -5.1 -6.1
carbon source D-Mannose (C) -8.7 -6.5 -4.9 -4.0 -7.2
carbon source D-Lactate (C) -7.7 -6.9 -6.7 -3.0 -6.9
carbon source L-Glutamine (C) -9.1 -6.1 -5.7 -3.7 -6.4
carbon source L-Arabinose (C) -7.6 -5.4 -6.6 -4.8 -6.1
carbon source L-Malic (C) -7.3 -8.0 -4.7 -4.7 -5.8
carbon source L-Rhamnose (C) -7.4 -6.6 -5.3 -4.4 -6.7
carbon source D-Glucose-6-Phosphate (C) -7.5 -6.7 -6.0 -3.8 -6.0
carbon source D-Glucose-6-Phosphate (C) -7.4 -5.7 -6.5 -4.0 -6.2
carbon source a-Ketoglutaric (C) -5.9 -6.7 -6.5 -3.6 -6.7
carbon source L-Glutamine (C) -6.4 -6.2 -6.0 -4.4 -6.5
nutrient Min media with glucose -6.4 -6.9 -5.3 -4.8 -6.1
carbon source D-Galacturonic Acid (C) -4.2 -7.7 -4.7 -5.6 -7.4
nutrient L-Serine -6.3 -6.8 -5.1 -4.8 -6.2
carbon source a-Ketoglutaric (C) -7.6 -5.9 -5.4 -4.1 -6.2
carbon source D-Galactose (C) -7.3 -6.5 -5.8 -3.1 -6.6
carbon source succinate (C) -6.1 -6.0 -5.1 -4.9 -6.9
nitrogen source L-Proline (N) -6.0 -6.9 -5.3 -4.7 -6.2
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days -5.0 -6.9 -4.6 -4.3 -8.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -8.2 -5.7 -4.5 -4.3 -6.1
carbon source D,L-Malic Acid (C) -7.4 -5.5 -6.5 -2.9 -6.5
stress Chloride stress -7.6 -4.9 -6.7 -3.2 -6.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -8.2 -5.7 -5.4 -3.8 -5.3
carbon source L-Rhamnose (C) -6.1 -4.9 -6.7 -4.0 -6.7
carbon source L-Asparagine (C) -7.2 -5.5 -5.4 -3.8 -6.4
carbon source L-Proline (C) -5.4 -6.8 -6.7 -3.0 -6.2
carbon source m-Inositol (C) -7.3 -5.1 -5.6 -4.6 -5.5
carbon source Glycerol (C) -6.1 -6.7 -4.8 -4.9 -5.6
carbon source D,L-Malic Acid (C) -7.6 -5.1 -6.1 -3.2 -6.0
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