Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS20155 and HSERO_RS20160 overlap by 37 nucleotidesHSERO_RS20160 and HSERO_RS20165 are separated by 0 nucleotidesHSERO_RS20165 and HSERO_RS20170 are separated by 121 nucleotidesHSERO_RS20170 and HSERO_RS20175 are separated by 34 nucleotides HSERO_RS20155: HSERO_RS20155 - type VI secretion protein, at 4,628,948 to 4,630,036 _RS20155 HSERO_RS20160: HSERO_RS20160 - type VI secretion protein, at 4,630,000 to 4,631,844 _RS20160 HSERO_RS20165: HSERO_RS20165 - type VI secretion protein, at 4,631,845 to 4,632,333 _RS20165 HSERO_RS20170: HSERO_RS20170 - hypothetical protein, at 4,632,455 to 4,632,946 _RS20170 HSERO_RS20175: HSERO_RS20175 - EvpB family type VI secretion protein, at 4,632,981 to 4,634,474 _RS20175
Group Condition HSERO_RS20155 HSERO_RS20160 HSERO_RS20165 HSERO_RS20170 HSERO_RS20175
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 +0.1 -0.3 -0.7 -0.1
carbon source D-Glucose (C) +0.0 -0.5 -0.5 -0.3 -0.0
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.6 -0.1 +0.0 -0.4 -0.2
carbon source D-Gluconic Acid (C) +0.2 +0.1 -0.4 -0.6 -0.2
stress Sisomicin 0.125 mg/ml +0.2 -0.3 +0.6 -1.1 -0.3
stress Lomefloxacin 0.012 mM -0.3 -0.4 +0.3 -0.3 -0.2
stress A22 0.04 mg/ml +0.1 -0.1 +0.2 -0.5 -0.3
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.0 +0.2 -0.5 +0.1 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 +0.2 -0.4 -0.3 +0.2
stress sodium fluoride 100 mM +0.4 +0.1 -0.2 +0.2 -0.5
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.2 -0.2 -0.4 +0.3 +0.0
agar plate interaction control Taped volatile agar plate with no fungus -0.3 +0.4 -0.3 +0.1 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 +0.5 -0.2 +0.2 -0.2
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.3 +0.1 +0.1 -0.5 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 +0.3 +0.4 -0.4 -0.4
carbon source Xylitol (C) +0.2 +0.3 +0.3 -0.6 +0.2
supernatant control Vogels_fungal_media; pH 5.5 -0.6 -0.0 +0.1 +0.4 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 +0.7 -0.0 -0.5 -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.3 +0.3 +0.6 -0.1 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -0.2 +0.1 +0.6 -0.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.3 +0.4 -0.2 +0.2 +0.1
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM +0.3 +0.2 -0.2 +0.5 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 +0.2 +0.9 -0.1 +0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +0.1 +0.0 +0.4 +0.3
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.4 +0.2 +0.4 +0.4 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 +0.4 +0.4 +0.3 +0.3
carbon source L-Asparagine (C) +0.5 +0.4 +0.3 +0.1 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 +0.1 +0.4 +0.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.0 +0.1 -0.2 +1.1 +0.8
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.1 +0.5 +0.6 +0.6 +0.3
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