Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS20145 and HSERO_RS20150 are separated by 56 nucleotidesHSERO_RS20150 and HSERO_RS20155 are separated by 71 nucleotidesHSERO_RS20155 and HSERO_RS20160 overlap by 37 nucleotidesHSERO_RS20160 and HSERO_RS20165 are separated by 0 nucleotides HSERO_RS20145: HSERO_RS20145 - type VI secretion protein, at 4,625,023 to 4,626,150 _RS20145 HSERO_RS20150: HSERO_RS20150 - ATPase, at 4,626,207 to 4,628,876 _RS20150 HSERO_RS20155: HSERO_RS20155 - type VI secretion protein, at 4,628,948 to 4,630,036 _RS20155 HSERO_RS20160: HSERO_RS20160 - type VI secretion protein, at 4,630,000 to 4,631,844 _RS20160 HSERO_RS20165: HSERO_RS20165 - type VI secretion protein, at 4,631,845 to 4,632,333 _RS20165
Group Condition HSERO_RS20145 HSERO_RS20150 HSERO_RS20155 HSERO_RS20160 HSERO_RS20165
carbon source D-Glucose (C) -0.4 +0.1 +0.0 -0.5 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.6 -0.2 -0.1 -0.1 +0.2
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.5 +0.1 +0.2 -0.2 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 +0.2 -0.2 -0.2 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 -0.1 +0.3 +0.0 -0.2
stress Lomefloxacin 0.012 mM -0.1 +0.1 -0.3 -0.4 +0.3
agar plate interaction control Taped volatile agar plate with no fungus +0.1 -0.1 -0.3 +0.4 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 -0.3 -0.2 -0.1 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 +0.0 -0.3 +0.5 -0.2
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM -0.3 +0.1 +0.2 +0.2 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 -0.1 +0.1 -0.0 -0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.3 +0.1 -0.3 +0.3 +0.6
control NoPredeControl -0.2 +0.3 +0.2 -0.2 +0.2
carbon source Xylitol (C) -0.3 +0.0 +0.2 +0.3 +0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.2 -0.0 +0.3 +0.4 -0.2
stress sodium fluoride 100 mM +0.4 +0.1 +0.4 +0.1 -0.2
carbon source D-Ribose (C) +0.4 +0.1 +0.5 +0.0 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.8 +0.0 +0.1 +0.4 -0.3
control NoPredeControl -0.2 +0.5 +0.5 +0.1 +0.0
stress Cisplatin 0.003 mg/ml -0.2 +0.3 +0.2 +0.3 +0.5
carbon source L-Asparagine (C) +0.2 +0.1 +0.5 +0.2 +0.1
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.0 +0.1 +0.4 +0.2 +0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.0 +0.1 -0.1 +0.5 +0.6
stress Sisomicin 0.125 mg/ml +0.6 +0.2 +0.2 -0.3 +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +0.0 +0.2 +0.6 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 +0.2 +0.2 +0.2 +0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 +0.2 +0.2 +0.7 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +0.1 +0.2 +0.4 +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +0.1 +0.8 +0.1 +0.4
carbon source L-Asparagine (C) +0.5 +0.1 +0.5 +0.4 +0.3
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