Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS20065 and HSERO_RS20070 are separated by 13 nucleotidesHSERO_RS20070 and HSERO_RS20075 overlap by 23 nucleotidesHSERO_RS20075 and HSERO_RS20080 are separated by 41 nucleotidesHSERO_RS20080 and HSERO_RS20085 are separated by 259 nucleotides HSERO_RS20065: HSERO_RS20065 - hypothetical protein, at 4,604,707 to 4,605,258 _RS20065 HSERO_RS20070: HSERO_RS20070 - acyl-CoA dehydrogenase, at 4,605,272 to 4,607,047 _RS20070 HSERO_RS20075: HSERO_RS20075 - MarR family transcriptional regulator, at 4,607,025 to 4,607,510 _RS20075 HSERO_RS20080: HSERO_RS20080 - hypothetical protein, at 4,607,552 to 4,607,785 _RS20080 HSERO_RS20085: HSERO_RS20085 - methyl-accepting chemotaxis protein, at 4,608,045 to 4,609,568 _RS20085
Group Condition HSERO_RS20065 HSERO_RS20070 HSERO_RS20075 HSERO_RS20080 HSERO_RS20085
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.0 +0.2 N.D. -0.8 -0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.3 +0.1 N.D. -1.3 +0.0
agar plate interaction control Taped volatile agar plate with no fungus +0.3 +0.1 N.D. -1.1 -0.2
control NoPredeControl -0.4 +0.1 N.D. -0.7 +0.2
carbon source L-Arabinose (C) -1.2 +0.1 N.D. +0.5 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 +0.0 N.D. -0.9 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +0.3 N.D. -0.8 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.3 N.D. -1.2 +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 -0.1 N.D. +0.8 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -0.2 N.D. +0.8 -0.1
carbon source L-Proline (C) -0.5 +0.0 N.D. +0.9 -0.1
carbon source D-Mannose (C) -0.4 -0.0 N.D. +1.0 -0.1
carbon source D,L-Lactate (C) -0.3 +0.1 N.D. +1.0 -0.1
stress Thallium(I) acetate 0.001 mg/ml +0.4 -0.1 N.D. +0.8 -0.3
carbon source L-Rhamnose (C) -0.3 -0.2 N.D. +1.3 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 +0.3 N.D. +0.7 +0.2
carbon source D-Xylose (C) -0.2 +0.1 N.D. +1.0 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.2 +0.1 N.D. +0.8 +0.2
carbon source D-Ribose (C) +0.2 +0.1 N.D. +0.9 -0.3
carbon source D-Sorbitol (C) -0.3 -0.2 N.D. +1.4 +0.0
carbon source D-Gluconic Acid (C) -0.2 -0.2 N.D. +1.5 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 +0.3 N.D. +0.6 +0.6
carbon source pyruvate (C) +0.1 +0.1 N.D. +1.0 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 +0.3 N.D. +0.7 +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 -0.1 N.D. +1.1 -0.0
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X +0.5 -0.0 N.D. +0.5 +0.4
carbon source D-Ribose (C) +0.5 +0.2 N.D. +0.4 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 -0.1 N.D. +0.4 +0.7
carbon source L-Fucose (C) +0.6 +0.2 N.D. +1.0 -0.1
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.2 +0.3 N.D. +1.3 -0.0
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