Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

Or view all 244 experiments or choose conditions or try the comparative fitness browser

Group	Condition	HSERO_RS20010	HSERO_RS20015	HSERO_RS20020	HSERO_RS20025	HSERO_RS20030
carbon source	m-Inositol (C)	+0.1	-0.1	-1.3	-0.4	-0.3
carbon source	m-Inositol (C)	+0.0	+0.1	-1.2	-0.0	-0.4
carbon source	L-Rhamnose (C)	+0.1	+0.0	-1.0	-0.2	-0.4
carbon source	D-Sorbitol (C)	+0.2	-0.1	-1.0	+0.1	-0.4
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.2	-0.6	-0.8	+0.2	-0.3
carbon source	L-Rhamnose (C)	+0.1	-0.2	-0.5	+0.2	-0.8
nutrient	Min media with glucose	-0.3	+0.4	-0.8	-0.2	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	+0.1	-1.1	+0.2	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	-0.3	-0.8	-0.2	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	-0.0	-0.9	+0.1	-0.2
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.1	-0.0	-0.5	-0.5	+0.4
carbon source	D-Glucose-6-Phosphate (C)	+0.4	+0.2	-0.8	-0.1	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.4	-0.8	-0.1	+0.1
nutrient	Min media with glucose	-0.1	+0.5	-0.7	-0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-0.3	-0.2	-0.4	+0.7
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 8 days	+0.1	+0.4	-0.8	+0.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.1	-0.7	-0.1	+0.7
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.4	+0.2	-0.6	+0.5	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	+0.0	-0.5	-0.4	+0.3	+0.5
supernatant control	Vogels_fungal_media; pH 5.5	+0.1	-0.0	-0.6	-0.1	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-0.3	-0.1	-0.4	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.1	+1.0	-0.6	-0.2	-0.1
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.0	+0.3	-0.6	+0.3	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	+0.3	-0.5	-0.2	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	+0.5	-0.6	-0.0	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	+0.2	+0.4	+0.3	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.0	-0.3	+0.2	+1.0
carbon source	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL	+0.3	+0.2	+0.3	+0.5	-0.4
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	+0.2	+0.1	+0.3	-0.0	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.6	+0.4	+0.3	+0.3	-0.0