Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

Or view all 244 experiments or choose conditions or try the comparative fitness browser

Group	Condition	HSERO_RS19890	HSERO_RS19895	HSERO_RS19900	HSERO_RS19905	HSERO_RS19910
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.7	-0.2	+0.0	+0.2	-1.1
control	NoPredeControl	-1.5	-0.1	+0.5	-0.4	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.2	+0.0	-0.6	+0.3	-0.7
carbon source	Glycerol (C)	-0.0	+0.1	+0.2	-0.2	-1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	-0.1	+0.2	+0.1	-1.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.4	+0.4	-0.2	+0.1	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	+0.2	+0.1	+0.1	-0.6
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.5	-0.2	-0.3	-0.0	+0.5
nutrient	Min media with glucose	+0.3	-0.3	+0.3	+0.0	-0.8
carbon source	Xylitol (C)	+0.1	+0.3	+0.1	-0.3	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.2	+0.2	+0.2	+0.3	-0.7
stress	Cisplatin 0.003 mg/ml	-0.5	-0.3	-0.0	-0.1	+0.6
agar plate interaction control	Taped volatile agar plate with no fungus	-0.7	+0.2	+0.5	+0.3	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	-0.2	+0.4	+0.3	-0.9
carbon source	D,L-Lactate (C)	-0.1	-0.5	-0.2	+0.1	+0.7
plant	Control soil assay; outgrowth in LB	-0.2	-0.4	-0.2	+0.0	+0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.1	+0.4	+0.1	-0.7
carbon source	L-Arabinose (C)	-0.1	-0.3	-0.2	+0.5	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.0	+0.8	+0.3	+0.0	-0.6
carbon source	D-Glucose-6-Phosphate (C)	+0.4	-0.3	+0.3	-0.3	+0.4
micoeukaryotes	Acanthamoeba sp., muxed culture-1	+0.2	+0.3	+0.4	+0.2	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+1.1	-0.2	-0.0	+0.1	-0.4
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.5	-0.0	+0.1	+0.5	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	+0.1	-0.4	-0.0	+1.0
carbon source	L-Malic (C)	+0.5	-0.0	-0.2	+0.0	+0.8
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.3	-0.1	+0.0	+0.2	+0.9
carbon source	D-Ribose (C)	+0.4	+0.0	+0.5	-0.1	+0.7
micoeukaryotes	C.elegans, mixed culture-1	+0.2	+0.2	+0.2	+0.4	+0.5
carbon source	D-Galactose (C)	+0.5	+0.2	-0.0	+0.2	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+1.6	+0.3	+0.5	+0.1	-0.3