Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS19870 and HSERO_RS19875 are separated by 90 nucleotidesHSERO_RS19875 and HSERO_RS19880 are separated by 154 nucleotidesHSERO_RS19880 and HSERO_RS19885 are separated by 316 nucleotidesHSERO_RS19885 and HSERO_RS19890 are separated by 338 nucleotides HSERO_RS19870: HSERO_RS19870 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 4,560,598 to 4,561,200 _RS19870 HSERO_RS19875: HSERO_RS19875 - 3-oxoacyl-ACP reductase, at 4,561,291 to 4,562,058 _RS19875 HSERO_RS19880: HSERO_RS19880 - pyruvate dehydrogenase E1, at 4,562,213 to 4,564,894 _RS19880 HSERO_RS19885: HSERO_RS19885 - AsnC family transcriptional regulator, at 4,565,211 to 4,565,690 _RS19885 HSERO_RS19890: HSERO_RS19890 - histidine kinase, at 4,566,029 to 4,566,559 _RS19890
Group Condition HSERO_RS19870 HSERO_RS19875 HSERO_RS19880 HSERO_RS19885 HSERO_RS19890
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.3 -0.1 -1.9 +0.3
agar plate interaction control Taped volatile agar plate with no fungus N.D. -0.3 -0.0 -0.7 -0.7
micoeukaryotes C.elegans, mixed culture-2 N.D. -0.1 +0.2 -1.4 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.0 +0.1 -1.6 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.4 +0.2 -0.8 -0.3
control NoPredeControl N.D. +0.4 +0.3 -0.3 -1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.1 +0.3 -1.1 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.2 +0.2 -1.0 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.3 +0.3 -0.9 +0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB N.D. -0.7 -0.1 +0.5 -0.4
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. +0.7 -0.1 -1.0 -0.2
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB N.D. -0.5 -0.1 +0.7 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.6 +0.4 -0.9 -0.1
carbon source L-Arabinose (C) N.D. -0.3 -0.1 +0.9 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.5 +0.3 -0.8 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.6 +0.4 +0.6 +0.3
carbon source L-Rhamnose (C) N.D. -0.3 +0.2 +1.0 -0.1
carbon source D,L-Lactate (C) N.D. -0.5 +0.1 +0.9 +0.4
carbon source pyruvate (C) N.D. -0.3 -0.0 +1.1 +0.3
carbon source L-Lactate (C) N.D. -0.5 +0.2 +1.0 +0.5
carbon source pyruvate (C) N.D. -0.4 +0.1 +1.1 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.3 -0.1 -0.2 +1.1
carbon source D-Ribose (C) N.D. -0.3 -0.1 +1.3 +0.4
carbon source L-Malic (C) N.D. -0.3 +0.0 +0.9 +0.5
carbon source D-Gluconic Acid (C) N.D. -0.7 +0.1 +1.4 +0.5
carbon source D-Galactose (C) N.D. -0.2 +0.1 +1.1 +0.5
carbon source L-Rhamnose (C) N.D. +0.1 -0.0 +1.2 +0.3
carbon source D-Ribose (C) N.D. -0.1 +0.1 +1.5 +0.4
carbon source D-Galactose (C) N.D. +0.2 +0.1 +1.0 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.8 +0.4 -0.3 +1.6
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