Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS19800	HSERO_RS19805	HSERO_RS19810	HSERO_RS19815	HSERO_RS19820
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.6	-6.1	-0.3	-1.9	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.2	-6.2	+0.2	-2.6	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.1	-6.2	+0.2	-2.5	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.3	-6.2	+0.3	-2.4	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.1	-6.3	-0.2	-0.9	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	-6.4	-0.5	+0.0	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.1	-6.4	-0.1	-1.0	+0.6
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-0.4	-6.3	-0.4	+0.1	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	-6.2	-0.6	+0.1	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.2	-5.6	-0.3	-0.6	+0.1
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.2	-6.3	-0.3	+0.3	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-6.2	-0.6	+0.0	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-6.2	-0.4	+0.1	-0.1
supernatant control	Vogels_fungal_media; pH 5.5	+0.1	-6.3	-0.1	+0.2	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.1	-4.3	+0.2	-2.2	-0.0
stress	Cisplatin 0.003 mg/ml	-0.7	-0.2	-4.8	-0.1	-0.3
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.0	-6.2	-0.2	+0.1	+0.3
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.1	-6.3	-0.3	+0.3	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-5.3	-0.5	+0.1	-0.1
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-0.2	-5.7	-0.2	+0.3	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	-4.8	-0.1	-0.9	-0.1
micoeukaryotes	Acanthamoeba sp., muxed culture-1	-0.6	-5.1	+0.0	+0.5	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	+0.2	-3.8	+0.2	-1.8	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	-4.4	-0.1	-1.0	+0.3
micoeukaryotes	Dictyostellum sp.mixed culture-2	+0.1	-5.6	-0.1	+0.8	-0.1
micoeukaryotes	C.elegans, mixed culture-1	-0.7	-4.7	+0.2	+0.6	+0.1
micoeukaryotes	Dictyostellum sp.mixed culture-1	-0.1	-4.7	+0.1	+0.6	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	+0.3	-4.7	-0.1	-0.2	+0.5
supernatant control	Vogels_fungal_media 0.1X	+0.0	-5.2	+0.1	+0.5	+0.2
agar plate interaction control	Taped volatile agar plate with no fungus	+0.2	-5.1	-0.3	+0.4	+0.8