Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS19465 and HSERO_RS19470 are separated by 96 nucleotidesHSERO_RS19470 and HSERO_RS19475 overlap by 1 nucleotidesHSERO_RS19475 and HSERO_RS19480 are separated by 237 nucleotidesHSERO_RS19480 and HSERO_RS19485 are separated by 128 nucleotides HSERO_RS19465: HSERO_RS19465 - major facilitator transporter, at 4,459,972 to 4,461,453 _RS19465 HSERO_RS19470: HSERO_RS19470 - ubiquinone biosynthesis protein UbiB, at 4,461,550 to 4,463,124 _RS19470 HSERO_RS19475: HSERO_RS19475 - sterol-binding protein, at 4,463,124 to 4,463,690 _RS19475 HSERO_RS19480: HSERO_RS19480 - membrane protein, at 4,463,928 to 4,464,881 _RS19480 HSERO_RS19485: HSERO_RS19485 - ubiquinone/menaquinone biosynthesis methyltransferase, at 4,465,010 to 4,465,744 _RS19485
Group Condition HSERO_RS19465 HSERO_RS19470 HSERO_RS19475 HSERO_RS19480 HSERO_RS19485
supernatant control Vogels_fungal_media; pH 5.5 -0.4 N.D. N.D. -1.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 N.D. N.D. -0.5 N.D.
plant Control soil assay; outgrowth in LB -0.2 N.D. N.D. -0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 N.D. N.D. -0.2 N.D.
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X -0.1 N.D. N.D. -0.5 N.D.
stress Chloride stress +0.1 N.D. N.D. -0.5 N.D.
supernatant control Vogels_fungal_media 0.1X -0.5 N.D. N.D. +0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 N.D. N.D. -0.5 N.D.
stress Lomefloxacin 0.012 mM +0.3 N.D. N.D. -0.6 N.D.
supernatant control Vogels_fungal_media 0.1X -0.6 N.D. N.D. +0.4 N.D.
nutrient casaminos -0.3 N.D. N.D. +0.3 N.D.
carbon source L-Asparagine (C) +0.4 N.D. N.D. -0.3 N.D.
stress Thallium(I) acetate 0.001 mg/ml +0.3 N.D. N.D. -0.3 N.D.
carbon source succinate (C) -0.3 N.D. N.D. +0.5 N.D.
carbon source D-Mannose (C) +0.4 N.D. N.D. -0.2 N.D.
stress nitrite 20 mM +0.6 N.D. N.D. -0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 N.D. N.D. +0.6 N.D.
carbon source pyruvate (C) -0.1 N.D. N.D. +0.6 N.D.
carbon source D-Glucose (C) -0.1 N.D. N.D. +0.6 N.D.
stress sodium fluoride 100 mM +0.4 N.D. N.D. +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 N.D. N.D. +0.6 N.D.
micoeukaryotes Acanthamoeba sp., muxed culture-1 +0.2 N.D. N.D. +0.5 N.D.
carbon source D-Gluconic Acid (C) +0.2 N.D. N.D. +0.5 N.D.
carbon source D-Lactate (C) +0.1 N.D. N.D. +0.7 N.D.
carbon source D-Sorbitol (C) -0.0 N.D. N.D. +0.8 N.D.
carbon source D-Xylose (C) +0.1 N.D. N.D. +0.7 N.D.
carbon source L-Arabinose (C) +0.2 N.D. N.D. +0.5 N.D.
carbon source Xylitol (C) +0.1 N.D. N.D. +0.7 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.3 N.D. N.D. +0.5 N.D.
carbon source D-Glucose-6-Phosphate (C) +0.1 N.D. N.D. +0.9 N.D.
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