Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 244 experiments or choose conditions or try the comparative fitness browser

500 ntHSERO_RS19410 and HSERO_RS19415 are separated by 82 nucleotidesHSERO_RS19415 and HSERO_RS19420 are separated by 186 nucleotidesHSERO_RS19420 and HSERO_RS19425 are separated by 209 nucleotidesHSERO_RS19425 and HSERO_RS19430 are separated by 44 nucleotides HSERO_RS19410: HSERO_RS19410 - universal stress protein, at 4,449,786 to 4,450,223 _RS19410 HSERO_RS19415: HSERO_RS19415 - membrane protein, at 4,450,306 to 4,451,538 _RS19415 HSERO_RS19420: HSERO_RS19420 - cobalt transporter, at 4,451,725 to 4,452,099 _RS19420 HSERO_RS19425: HSERO_RS19425 - ribulose-phosphate 3-epimerase, at 4,452,309 to 4,452,974 _RS19425 HSERO_RS19430: HSERO_RS19430 - phosphoglycolate phosphatase, at 4,453,019 to 4,453,699 _RS19430
Group Condition HSERO_RS19410 HSERO_RS19415 HSERO_RS19420 HSERO_RS19425 HSERO_RS19430
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -1.0 N.D. N.D. -0.3
stress Lomefloxacin 0.012 mM -0.7 -1.1 N.D. N.D. +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 -0.5 N.D. N.D. -0.5
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X -0.8 -0.6 N.D. N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.7 -0.7 N.D. N.D. -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -0.6 N.D. N.D. -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 -0.9 N.D. N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.1 -0.6 N.D. N.D. -0.7
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X -0.5 -0.4 N.D. N.D. -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 -0.4 N.D. N.D. -0.6
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -0.4 -0.4 N.D. N.D. -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -0.6 N.D. N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 -0.6 N.D. N.D. -0.2
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -0.5 -0.5 N.D. N.D. -0.3
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.5 -0.4 N.D. N.D. -0.4
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X -0.4 -0.2 N.D. N.D. -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 -0.9 N.D. N.D. -0.3
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.4 -0.5 N.D. N.D. -0.4
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X -0.3 -0.4 N.D. N.D. -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -0.5 N.D. N.D. -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -0.5 N.D. N.D. -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 -1.1 N.D. N.D. +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -0.7 N.D. N.D. -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 -0.8 N.D. N.D. -0.5
stress Sisomicin 0.125 mg/ml -0.7 -0.7 N.D. N.D. +0.3
carbon source L-Lactate (C) +0.6 -0.7 N.D. N.D. -0.9
micoeukaryotes C.elegans, mixed culture-2 -0.3 -0.9 N.D. N.D. +0.2
stress Cisplatin 0.003 mg/ml +0.2 -1.3 N.D. N.D. +0.4
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.6 -0.3 N.D. N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 +0.6 N.D. N.D. -0.5
remove
HSERO_RS19410
plot		 remove
HSERO_RS19415
plot		 remove
HSERO_RS19420		 remove
HSERO_RS19425
plot		 remove
HSERO_RS19430
plot