Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS19305	HSERO_RS19310	HSERO_RS19315	HSERO_RS19320	HSERO_RS19325
carbon source	D-Xylose (C)	-0.4	+0.2	+0.2	+0.0	-5.6
carbon source	D-Xylose (C)	+0.0	-0.0	+0.4	-0.1	-4.7
carbon source	D-Xylose (C)	+0.1	-0.3	+0.4	+0.3	-4.9
carbon source	L-Fucose (C)	+0.1	-0.2	-0.1	-0.2	-1.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	-0.2	-1.7	-0.2	+0.1
carbon source	D-Glucose (C)	-0.4	-1.3	-0.2	-0.1	+0.1
plant	Control soil assay; outgrowth in LB	-0.7	-0.5	-0.6	+0.0	+0.0
carbon source	D-Gluconic Acid (C)	-0.2	-1.3	-0.1	-0.0	-0.1
carbon source	L-Fucose (C)	+0.4	-0.6	+0.1	+0.5	-2.1
plant	Control soil assay; outgrowth in LB	-0.3	-0.1	-0.6	+0.1	-0.5
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.1	-0.5	-0.7	-0.3	+0.1
carbon source	L-Rhamnose (C)	-0.4	-0.1	-0.4	+0.2	-0.6
stress	Sisomicin 0.125 mg/ml	-0.5	-0.8	+0.2	-0.1	+0.0
carbon source	L-Asparagine (C)	-0.2	-0.7	-0.4	+0.0	+0.3
carbon source	Xylitol (C)	-0.2	-1.0	-0.1	+0.2	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.7	-0.4	-0.4	-0.5	-0.2
carbon source	D-Galactose (C)	-0.2	-0.8	-0.4	+0.7	+0.0
carbon source	D-Sorbitol (C)	+0.3	-0.5	-0.8	+0.5	-0.0
supernatant control	Vogels_fungal_media; pH 5.5	-0.1	+0.2	-0.9	+0.1	+0.3
carbon source	D-Ribose (C)	-0.3	-0.5	-0.7	+0.3	+1.0
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.3	+0.4	+0.1	-0.3	-0.7
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.1	+1.1	-0.2	-0.1	-0.6
carbon source	L-Arabinose (C)	+0.2	-0.7	+0.2	+0.5	+0.2
carbon source	D-Ribose (C)	+0.5	-1.0	-0.4	+0.3	+1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+1.7	-0.6	-0.2	-0.0
carbon source	Carbon source 2-Deoxy-D-Ribose 5 mM	-0.2	+1.1	+0.3	+0.0	-0.3
vitamin	No vitamins t1	-0.2	+0.5	+0.8	+0.3	-0.1
vitamin	With vitamins t1	+0.1	+0.1	+1.3	+0.3	-0.2
carbon source	L-Fucose (C)	-0.3	-0.0	+0.2	-0.3	+2.2
carbon source	L-Fucose (C)	-0.2	+0.3	-0.1	-0.1	+2.2