Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS18955 and HSERO_RS18960 are separated by 307 nucleotidesHSERO_RS18960 and HSERO_RS18965 are separated by 29 nucleotidesHSERO_RS18965 and HSERO_RS18970 are separated by 48 nucleotidesHSERO_RS18970 and HSERO_RS18975 are separated by 38 nucleotides HSERO_RS18955: HSERO_RS18955 - glycerol-3-phosphate ABC transporter substrate-binding protein, at 4,350,051 to 4,351,364 _RS18955 HSERO_RS18960: HSERO_RS18960 - 4-hydroxybenzoate polyprenyltransferase, at 4,351,672 to 4,352,526 _RS18960 HSERO_RS18965: HSERO_RS18965 - thiopurine S-methyltransferase, at 4,352,556 to 4,353,215 _RS18965 HSERO_RS18970: HSERO_RS18970 - hypothetical protein, at 4,353,264 to 4,353,626 _RS18970 HSERO_RS18975: HSERO_RS18975 - hypothetical protein, at 4,353,665 to 4,353,955 _RS18975
Group Condition HSERO_RS18955 HSERO_RS18960 HSERO_RS18965 HSERO_RS18970 HSERO_RS18975
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 N.D. -0.9 -1.5 -1.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 N.D. -0.4 -2.1 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 N.D. +0.1 -1.8 -0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 N.D. -1.4 -0.2 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.0 N.D. -0.9 -1.0 -0.4
carbon source L-Fucose (C) -0.2 N.D. -1.4 -0.9 +0.3
carbon source D-Gluconic Acid (C) -0.3 N.D. -1.6 -0.4 +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 N.D. -1.1 -0.3 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 N.D. +0.3 -1.3 -0.6
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.0 N.D. +0.6 -0.6 -1.3
carbon source D,L-Lactate (C) -0.5 N.D. -0.8 -0.9 +0.9
carbon source D-Lactate (C) +0.0 N.D. -0.7 -1.3 +0.7
carbon source D-Glucose-6-Phosphate (C) +0.1 N.D. -0.6 -1.0 +0.5
carbon source D-Sorbitol (C) +0.0 N.D. -0.5 -1.2 +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 N.D. -0.7 -0.9 +0.5
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.3 N.D. +0.6 -0.7 -0.9
carbon source Glycerol (C) +0.2 N.D. +0.7 -0.7 -0.6
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.1 N.D. +0.7 -1.2 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.0 N.D. +1.5 -1.1 -0.5
carbon source L-Proline (C) +0.5 N.D. +0.7 -0.5 -0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 N.D. +1.1 -1.1 -0.1
carbon source D-Ribose (C) +0.2 N.D. -0.2 -0.8 +1.1
stress A22 0.02 mg/ml +0.4 N.D. +1.4 -0.7 -0.8
carbon source D-Glucose (C) -0.3 N.D. +0.6 -0.8 +1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 N.D. +1.4 -0.7 -0.0
control NoPredeControl +0.6 N.D. +0.6 -0.9 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 N.D. +0.6 -0.6 +1.2
stress sodium fluoride 100 mM +0.9 N.D. +1.3 -0.6 -0.5
carbon source pyruvate (C) -0.1 N.D. +1.0 -0.4 +0.8
stress Nickel (II) chloride 0.6 mM +0.2 N.D. +1.0 +0.8 +0.4
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