Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS18860	HSERO_RS18865	HSERO_RS18870	HSERO_RS18875	HSERO_RS18880
stress	sodium fluoride 100 mM	-0.3	-0.1	-0.1	-3.7	+0.5
carbon source	pyruvate (C)	-0.9	-0.2	-0.1	-1.2	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	-0.1	-0.2	-1.0	+0.0
carbon source	D,L-Lactate (C)	-0.7	+0.1	-0.2	-1.2	-0.1
stress	nitrite 20 mM	-0.3	-0.1	+0.2	-1.8	-0.0
carbon source	D-Galactose (C)	-0.4	-0.1	+0.0	-1.2	-0.2
micoeukaryotes	Dictyostellum sp.mixed culture-1	+0.5	-0.0	-0.2	-2.1	+0.1
carbon source	a-Ketoglutaric (C)	-0.6	+0.1	-0.0	-1.3	+0.1
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.0	+0.1	+0.0	-1.5	-0.2
carbon source	D-Ribose (C)	-0.4	+0.0	-0.0	-1.4	+0.3
carbon source	L-Arabinose (C)	-0.1	-0.2	-0.1	-1.4	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.0	+0.2	+0.1	-0.7	+0.1
stress	Fusidic 0.025 mg/ml	+0.4	-0.2	-0.3	-0.8	-0.2
carbon source	Xylitol (C)	-0.5	-0.2	+0.1	-0.8	+0.3
nitrogen fixation	L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days	-0.8	-0.0	-0.1	+0.6	-0.3
carbon source	D-Galactose (C)	-1.1	+0.1	-0.1	+0.8	-0.1
agar plate interaction control	Taped volatile agar plate with no fungus	+1.1	+0.3	+0.1	-1.7	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.6	+0.2	+0.2	-0.3	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9	+0.3	-0.1	+0.4	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	-0.1	+0.2	-0.8	+0.2
carbon source	L-Fucose (C)	-0.7	-0.1	+0.2	+0.8	-0.0
carbon source	L-Malic (C)	-0.5	-0.2	+0.1	+1.1	-0.0
carbon source	D-Gluconic Acid (C)	-0.7	-0.1	+0.1	+0.9	+0.3
carbon source	succinate (C)	-0.5	-0.1	-0.2	+1.2	+0.4
control	NoPredeControl	+0.7	+0.1	+0.2	-0.5	+0.4
vitamin	No vitamins t1	+0.4	-0.2	+0.2	+1.0	-0.5
vitamin	With vitamins t2	+0.5	-0.1	-0.0	+1.0	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+1.2	+0.2	+0.3	-0.6	+0.1
control	NoPredeControl	+1.0	-0.3	+0.1	+1.0	-0.5
vitamin	With vitamins t1	+0.4	-0.0	+0.0	+1.4	-0.3