Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS18850 and HSERO_RS18855 are separated by 9 nucleotidesHSERO_RS18855 and HSERO_RS18860 are separated by 243 nucleotidesHSERO_RS18860 and HSERO_RS18865 are separated by 38 nucleotidesHSERO_RS18865 and HSERO_RS18870 are separated by 61 nucleotides HSERO_RS18850: HSERO_RS18850 - transcriptional regulator, at 4,323,470 to 4,324,180 _RS18850 HSERO_RS18855: HSERO_RS18855 - sensor protein KdpD, at 4,324,190 to 4,326,946 _RS18855 HSERO_RS18860: HSERO_RS18860 - potassium-transporting ATPase subunit C, at 4,327,190 to 4,327,801 _RS18860 HSERO_RS18865: HSERO_RS18865 - potassium-transporting ATPase subunit B, at 4,327,840 to 4,330,032 _RS18865 HSERO_RS18870: HSERO_RS18870 - ATPase, at 4,330,094 to 4,331,875 _RS18870
Group Condition HSERO_RS18850 HSERO_RS18855 HSERO_RS18860 HSERO_RS18865 HSERO_RS18870
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. -0.9 -0.7 +0.0 +0.0
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days N.D. -0.4 -0.8 -0.0 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.2 -0.7 -0.1 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.1 -1.1 +0.0 -0.1
carbon source D-Glucose-6-Phosphate (C) N.D. -0.3 -0.8 -0.1 -0.1
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. -1.1 +0.1 -0.0 -0.2
carbon source D-Galactose (C) N.D. -0.1 -1.1 +0.1 -0.1
plant Control soil assay; outgrowth in LB N.D. -0.0 -1.2 +0.1 -0.0
carbon source pyruvate (C) N.D. +0.1 -0.9 -0.2 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.3 -1.0 +0.2 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.4 -0.5 +0.2 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.1 -0.9 +0.3 -0.1
nitrogen source L-Glutamic (N); low aeration N.D. +0.2 -0.8 -0.1 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.7 +0.3 +0.1 -0.2
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. -0.7 +0.5 -0.0 -0.1
carbon source D-Gluconic Acid (C) N.D. +0.4 -0.7 -0.1 +0.1
carbon source L-Fucose (C) N.D. +0.3 -0.7 -0.1 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.3 -0.9 +0.2 +0.2
carbon source L-Asparagine (C) N.D. +0.4 -0.7 +0.1 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.2 -0.4 +0.5 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.7 +0.2 +0.3 +0.0
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. +0.3 -0.7 +0.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.4 -0.3 +0.4 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.2 +0.7 -0.1 +0.2
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days N.D. +0.2 +0.7 +0.2 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.2 +0.9 +0.0 +0.0
control NoPredeControl N.D. +0.3 +1.0 -0.3 +0.1
agar plate interaction control Taped volatile agar plate with no fungus N.D. -0.2 +1.1 +0.3 +0.1
control NoPredeControl N.D. +0.3 +0.7 +0.1 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.1 +1.2 +0.2 +0.3
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