Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS18820	HSERO_RS18825	HSERO_RS18830	HSERO_RS18835	HSERO_RS18840
carbon source	m-Inositol (C)	-0.4	-0.0	-0.3	-0.5	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.8	+0.0	-0.0	-0.5	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.3	-0.3	-0.5	-0.1
stress	Sisomicin 0.125 mg/ml	-1.2	+0.3	-0.4	+0.2	-0.1
carbon source	D-Glucose-6-Phosphate (C)	-0.4	-0.2	+0.2	-0.4	-0.2
carbon source	D-Glucose (C)	-0.7	-0.1	+0.0	+0.5	-0.5
carbon source	L-Rhamnose (C)	+0.1	-0.3	+0.3	-0.1	-0.5
carbon source	D-Ribose (C)	-0.4	+0.2	+0.0	+0.2	-0.6
stress	Lomefloxacin 0.012 mM	-0.8	-0.0	+0.0	+0.5	-0.2
carbon source	D-Xylose (C)	-0.0	-0.2	-0.2	+0.5	-0.4
carbon source	L-Arabinose (C)	-0.1	+0.2	-0.4	+0.6	-0.5
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.1	+0.3	+0.6	-1.0	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.0	+0.4	+0.4	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-0.1	+0.3	-0.3	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.2	+0.7	-0.1	-0.6	+0.4
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.5	+0.6	-0.1	+0.5	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.0	-0.4	+0.1	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.4	+0.5	-0.2	-0.2	+0.0
plant	Control soil assay; outgrowth in LB	-0.2	+0.1	+0.3	+0.6	-0.1
stress	Chloride stress	-0.3	+0.1	+0.3	+0.4	+0.2
carbon source	D-Glucose (C)	-0.3	+0.2	+0.3	+0.3	+0.2
carbon source	D-Mannitol (C)	-0.2	+0.4	+0.3	+0.3	-0.0
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	-0.2	+0.1	+0.3	+0.4	+0.3
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.3	+0.5	+0.3	+0.2	+0.3
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.4	+0.3	+0.3	+0.6	+0.3
carbon source	L-Fucose (C)	-0.1	+0.3	+0.3	+0.6	+0.1
carbon source	L-Rhamnose (C)	+0.0	+0.1	+0.3	+0.5	+0.4
stress	nitrate 200 mM	+0.6	+0.0	+0.1	+0.5	+0.1
carbon source	D,L-Lactate (C)	-0.0	+0.3	+0.5	+0.4	+0.2
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.3	+0.5	+0.3	+0.1	+0.3