Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS18815 and HSERO_RS18820 are separated by 327 nucleotidesHSERO_RS18820 and HSERO_RS18825 are separated by 8 nucleotidesHSERO_RS18825 and HSERO_RS18830 are separated by 270 nucleotidesHSERO_RS18830 and HSERO_RS18835 are separated by 512 nucleotides HSERO_RS18815: HSERO_RS18815 - dihydropteridine reductase, at 4,316,044 to 4,316,697 _RS18815 HSERO_RS18820: HSERO_RS18820 - LysR family transcriptional regulator, at 4,317,025 to 4,317,930 _RS18820 HSERO_RS18825: HSERO_RS18825 - membrane protein, at 4,317,939 to 4,318,913 _RS18825 HSERO_RS18830: HSERO_RS18830 - membrane protein, at 4,319,184 to 4,320,782 _RS18830 HSERO_RS18835: HSERO_RS18835 - hypothetical protein, at 4,321,295 to 4,321,834 _RS18835
Group Condition HSERO_RS18815 HSERO_RS18820 HSERO_RS18825 HSERO_RS18830 HSERO_RS18835
carbon source D-Glucose (C) -0.9 -0.7 -0.1 +0.0 +0.5
carbon source D-Glucose-6-Phosphate (C) -0.4 -0.4 -0.2 +0.2 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.8 +0.0 -0.0 -0.5
stress Sisomicin 0.125 mg/ml +0.1 -1.2 +0.3 -0.4 +0.2
carbon source m-Inositol (C) +0.6 -0.4 -0.0 -0.3 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +0.1 -0.3 -0.3 -0.5
stress Lomefloxacin 0.012 mM -0.2 -0.8 -0.0 +0.0 +0.5
carbon source D-Glucose-6-Phosphate (C) +0.5 -0.5 -0.0 -0.3 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 -0.2 +0.7 -0.1 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 +0.4 +0.5 -0.2 -0.2
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +0.2 -0.6 +0.1 +0.1 +0.5
stress Chloride stress -0.2 -0.3 +0.1 +0.3 +0.4
carbon source L-Fucose (C) +0.8 -0.1 +0.2 +0.0 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +0.0 -0.3 +0.2 -0.1
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.1 -0.5 +0.6 -0.1 +0.5
carbon source L-Arabinose (C) +0.4 -0.1 +0.2 -0.4 +0.6
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.9 -0.1 +0.3 +0.6 -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 -0.4 -0.0 +0.4 +0.4
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.1 -0.3 +0.5 +0.3 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 -0.2 +0.3 +0.4 +0.1
carbon source D-Mannitol (C) +0.1 -0.2 +0.4 +0.3 +0.3
plant Control soil assay; outgrowth in LB +0.1 -0.2 +0.1 +0.3 +0.6
carbon source L-Fucose (C) -0.1 -0.1 +0.3 +0.3 +0.6
stress nitrate 200 mM -0.2 +0.6 +0.0 +0.1 +0.5
supernatant control Vogels_fungal_media; pH 5.5 +0.6 -0.1 +0.1 +0.0 +0.5
carbon source D,L-Lactate (C) +0.2 -0.0 +0.3 +0.5 +0.4
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.4 +0.1 +0.1 +0.0 +0.7
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.3 +0.3 +0.3 +0.1 +0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.5 +0.1 +0.1 +0.2 +0.6
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.9 -0.4 +0.3 +0.3 +0.6
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