Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS18625	HSERO_RS18630	HSERO_RS18635	HSERO_RS18640	HSERO_RS18645
carbon source	Xylitol (C)	+0.1	-3.8	+0.2	-0.2	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.7	-2.5	+0.2	+0.1	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.0	-1.8	-0.1	-0.2	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-1.4	-0.2	+0.0	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-1.1	+0.1	+0.1	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.5	+0.6	+0.1	-0.1	-0.5
stress	Sisomicin 0.125 mg/ml	-0.3	+0.8	-0.1	-0.3	-0.5
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.2	-1.0	+0.1	+0.2	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.8	+0.1	+0.5	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5	-0.5	+0.1	-0.2	+1.0
control	NoPredeControl	+0.1	+0.4	+0.5	-0.8	-0.1
stress	Lomefloxacin 0.012 mM	-0.3	+0.7	-0.2	-0.4	+0.3
nitrogen source	L-Glutamic (N); high aeration	-0.2	+1.3	-0.2	-0.2	-0.1
carbon source	Glycerol (C)	-0.3	+0.8	+0.0	-0.4	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.7	-0.4	+0.1	+0.5	-0.2
carbon source	D-Glucose-6-Phosphate (C)	-0.1	+1.2	+0.1	-0.2	-0.3
plant	Control soil assay; outgrowth in LB	-0.8	+1.8	-0.1	+0.1	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.4	+0.8	-0.2	+0.3	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	+0.3	+0.1	-0.2	+0.9
carbon source	L-Fucose (C)	-0.2	+1.2	-0.2	+0.0	+0.2
carbon source	L-Arabinose (C)	+0.2	+1.5	-0.2	-0.0	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+1.2	+0.0	-0.3	+0.1
carbon source	L-Rhamnose (C)	-0.1	+1.5	+0.0	-0.0	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.2	+1.8	-0.1	-0.3	+0.5
nitrogen source	Ammonium chloride (N); low aeration	+0.0	+1.6	+0.1	+0.1	-0.1
stress	Chloride stress	+0.2	+1.1	+0.0	+0.1	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+1.4	+0.1	+0.1	-0.0
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.8	+0.5	-0.1	+0.1	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	+1.9	+0.4	-0.2	-0.3
carbon source	L-Arabinose (C)	+0.5	+1.2	+0.0	+0.1	+0.5