Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS18500	HSERO_RS18505	HSERO_RS18510	HSERO_RS18515	HSERO_RS18520
stress	Cobalt chloride 0.2 mM	-0.0	-0.2	-1.0	-1.9	-1.4
stress	Nickel (II) chloride 0.6 mM	-0.0	-0.1	-0.6	-1.3	-1.0
plant	Control soil assay; outgrowth in LB	-0.5	-0.3	-0.6	-0.8	-0.6
plant	Control soil assay; outgrowth in LB	-0.3	-0.2	-0.7	-0.3	-1.1
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.1	-0.0	-0.9	-0.9	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.8	-0.7	+0.4	-1.0	-0.3
vitamin	No vitamins t2	+0.2	-0.0	+0.0	-1.4	-0.9
vitamin	No vitamins t1	-0.0	-0.4	-0.0	-0.8	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.1	+0.1	-1.4	-0.8
carbon source	L-Proline (C)	-0.3	-0.1	-0.3	-0.7	-0.4
carbon source	D-Mannose (C)	-0.2	-0.5	-0.7	-0.5	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.3	-0.6	-0.6	-0.3
vitamin	With vitamins t2	+0.2	-0.3	-0.2	-0.6	-0.8
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 8 days	-0.2	-0.2	+0.1	-0.7	-0.6
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 3 days	-0.4	-0.4	+0.3	-0.3	-0.4
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.4	-0.0	+0.3	-0.1	-0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	-0.4	+0.4	-0.6	-0.4
nitrogen source	nitrate (N); high aeration	-0.1	+0.2	+0.3	-1.1	-0.3
micoeukaryotes	C.elegans, mixed culture-2	+0.0	+0.1	+0.3	-1.0	-0.3
carbon source	L-Rhamnose (C)	-0.8	+0.1	-0.4	+0.4	+0.1
carbon source	Glycerol (C)	-0.4	+0.2	+0.5	-0.6	-0.2
agar plate interaction control	Taped volatile agar plate with no fungus	-0.2	-0.2	+0.9	-0.5	-0.3
carbon source	D,L-Lactate (C)	+0.3	+0.5	-0.1	-0.5	-0.4
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.2	-0.4	+0.2	+1.3	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	+0.2	+0.9	+0.5	-0.1
control	NoPredeControl	+0.5	+0.0	+0.6	+0.7	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.0	+0.4	+1.3	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	-0.0	-0.6	+2.6	-0.0
stress	Lomefloxacin 0.012 mM	+0.6	+0.7	-0.2	+0.6	+0.7
carbon source	D-Galacturonic Acid (C)	+0.4	+0.5	+0.4	+1.0	+0.5