Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS18125 and HSERO_RS18130 are separated by 36 nucleotidesHSERO_RS18130 and HSERO_RS18135 are separated by 61 nucleotidesHSERO_RS18135 and HSERO_RS18145 are separated by 1137 nucleotidesHSERO_RS18145 and HSERO_RS18150 are separated by 14 nucleotides HSERO_RS18125: HSERO_RS18125 - alkylhydroperoxidase, at 4,163,430 to 4,163,996 _RS18125 HSERO_RS18130: HSERO_RS18130 - nucleoside 2-deoxyribosyltransferase, at 4,164,033 to 4,164,533 _RS18130 HSERO_RS18135: HSERO_RS18135 - acyl-CoA dehydrogenase, at 4,164,595 to 4,167,069 _RS18135 HSERO_RS18145: HSERO_RS18145 - membrane protein, at 4,168,207 to 4,168,587 _RS18145 HSERO_RS18150: HSERO_RS18150 - hypothetical protein, at 4,168,602 to 4,168,886 _RS18150
Group Condition HSERO_RS18125 HSERO_RS18130 HSERO_RS18135 HSERO_RS18145 HSERO_RS18150
carbon source D-Gluconic Acid (C) -0.1 +0.1 -0.1 -0.7 -1.5
stress Sisomicin 0.125 mg/ml +0.2 -0.2 -0.0 -2.1 -0.0
stress Lomefloxacin 0.012 mM -0.3 -0.3 +0.4 -1.7 -0.1
carbon source D-Galactose (C) -0.3 -0.7 -0.1 -0.5 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 +0.3 -0.1 -0.8 -0.3
carbon source D-Glucose-6-Phosphate (C) -0.5 +0.1 -0.2 -0.7 +0.1
carbon source L-Arabinose (C) +0.3 -0.4 -0.1 -1.1 +0.1
carbon source D-Galactose (C) -0.9 -0.0 -0.2 -0.3 +0.3
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.5 -0.0 -0.3 -0.6 -0.3
carbon source D-Gluconic Acid (C) -0.1 +0.0 +0.1 -1.0 +0.4
carbon source D-Glucose (C) -0.9 -0.2 +0.0 +0.8 -0.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.2 +0.1 -0.2 +0.8 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 +0.5 -0.0 -0.3 -1.0
carbon source D-Xylose (C) -0.6 +0.3 -0.0 -0.4 +0.8
stress sodium fluoride 100 mM +0.2 -0.4 +0.3 -0.4 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 +0.0 -0.1 -0.5 +1.4
carbon source Xylitol (C) -0.7 +0.2 -0.2 +0.7 +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 +0.2 +0.2 +0.7 +0.5
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.4 +0.1 +0.1 +0.8 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +0.3 +0.6 -0.2 +0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.4 +0.3 +0.3 +0.4 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.0 +0.0 -0.0 -0.3 +1.6
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +0.2 +0.3 +0.9 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 +0.1 +0.4 +0.1 +1.3
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.7 +0.2 +0.2 +0.4 +0.1
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.5 -0.1 -0.0 +1.9 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.5 +0.3 +0.0 -0.1 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.1 +0.3 -0.1 +0.6 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.0 +0.0 -0.3 +0.6 +1.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.3 +0.1 +0.4 +2.1
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