Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS18040 and HSERO_RS18045 are separated by 318 nucleotidesHSERO_RS18045 and HSERO_RS18050 are separated by 240 nucleotidesHSERO_RS18050 and HSERO_RS18055 are separated by 497 nucleotidesHSERO_RS18055 and HSERO_RS18060 are separated by 17 nucleotides HSERO_RS18040: HSERO_RS18040 - alanyl-tRNA synthetase, at 4,145,518 to 4,148,142 _RS18040 HSERO_RS18045: HSERO_RS18045 - hypothetical protein, at 4,148,461 to 4,148,676 _RS18045 HSERO_RS18050: HSERO_RS18050 - glycerophosphodiester phosphodiesterase, at 4,148,917 to 4,149,660 _RS18050 HSERO_RS18055: HSERO_RS18055 - histidine kinase, at 4,150,158 to 4,151,300 _RS18055 HSERO_RS18060: HSERO_RS18060 - LytR family transcriptional regulator, at 4,151,318 to 4,152,124 _RS18060
Group Condition HSERO_RS18040 HSERO_RS18045 HSERO_RS18050 HSERO_RS18055 HSERO_RS18060
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -4.6 -0.8 +0.4 -0.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB N.D. -1.7 -0.2 -0.4 -0.5
stress Fusidic 0.025 mg/ml N.D. -1.9 -0.4 +0.1 -0.4
carbon source D-Lactate (C) N.D. -1.7 -0.5 -0.1 -0.1
carbon source Carbon source D-Glucose 20 mM N.D. -2.0 +0.0 -0.0 -0.1
vitamin With vitamins t2 N.D. -1.6 -0.6 -0.1 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -2.8 -0.2 +0.6 +0.6
carbon source Xylitol (C) N.D. -1.9 +0.0 +0.1 +0.0
stress Dimethyl Sulfoxide 5 vol% N.D. -0.7 -0.9 +0.2 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.7 +0.4 -0.0 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -1.6 +0.3 +0.1 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.9 -0.8 +0.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.4 -1.1 +0.3 -0.1
carbon source Xylitol (C) N.D. -1.4 -0.5 +0.7 -0.0
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM N.D. -1.3 +0.4 -0.2 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -1.3 -0.6 +0.4 +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.1 -0.0 -0.1 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.3 -0.8 +0.1 +0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -2.2 +1.6 +0.6 -0.0
carbon source D-Ribose (C) N.D. +1.0 -0.6 -0.4 +0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X N.D. +1.5 -0.2 -0.2 -0.1
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. +0.8 +0.7 +0.2 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +1.5 -0.1 +0.2 -0.1
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB N.D. +1.9 +0.2 -0.1 +0.0
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB N.D. +1.7 -0.1 +0.2 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.5 +2.6 +0.2 -0.2
plant Control soil assay; outgrowth in LB N.D. +1.9 -0.2 +0.6 +0.0
supernatant control Vogels_fungal_media; pH 5.5 N.D. +1.9 +0.3 +0.3 -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. +2.6 -0.1 -0.1 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +6.0 -0.2 +0.2 -0.2
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