Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS17985 and HSERO_RS17990 are separated by 130 nucleotidesHSERO_RS17990 and HSERO_RS17995 are separated by 109 nucleotidesHSERO_RS17995 and HSERO_RS18000 are separated by 52 nucleotidesHSERO_RS18000 and HSERO_RS18005 overlap by 4 nucleotides HSERO_RS17985: HSERO_RS17985 - tRNA pseudouridine synthase B, at 4,129,881 to 4,130,885 _RS17985 HSERO_RS17990: HSERO_RS17990 - ribosome-binding factor A, at 4,131,016 to 4,131,408 _RS17990 HSERO_RS17995: HSERO_RS17995 - translation initiation factor IF-2, at 4,131,518 to 4,134,382 _RS17995 HSERO_RS18000: HSERO_RS18000 - transcription termination factor NusA, at 4,134,435 to 4,135,994 _RS18000 HSERO_RS18005: HSERO_RS18005 - ribosome maturation protein RimP, at 4,135,991 to 4,136,485 _RS18005
Group Condition HSERO_RS17985 HSERO_RS17990 HSERO_RS17995 HSERO_RS18000 HSERO_RS18005
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.5 N.D. N.D. N.D. N.D.
micoeukaryotes C.elegans, mixed culture-2 -1.3 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.2 N.D. N.D. N.D. N.D.
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -1.2 N.D. N.D. N.D. N.D.
micoeukaryotes Acanthamoeba sp., muxed culture-2 -1.2 N.D. N.D. N.D. N.D.
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM -1.0 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.9 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.9 N.D. N.D. N.D. N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.9 N.D. N.D. N.D. N.D.
carbon source D-Galacturonic Acid (C) -0.9 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.9 N.D. N.D. N.D. N.D.
carbon source D-Galactose (C) -0.8 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.8 N.D. N.D. N.D. N.D.
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM -0.8 N.D. N.D. N.D. N.D.
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM -0.8 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.8 N.D. N.D. N.D. N.D.
nitrogen source nitrate (N); low aeration -0.8 N.D. N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 N.D. N.D. N.D. N.D.
vitamin With vitamins t2 -0.8 N.D. N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 N.D. N.D. N.D. N.D.
carbon source L-mannose (C) -0.8 N.D. N.D. N.D. N.D.
stress Chloride stress -0.8 N.D. N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -0.8 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.7 N.D. N.D. N.D. N.D.
stress Thallium(I) acetate 0.001 mg/ml +0.9 N.D. N.D. N.D. N.D.
stress Sisomicin 0.125 mg/ml +1.1 N.D. N.D. N.D. N.D.
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days +1.2 N.D. N.D. N.D. N.D.
stress Nickel (II) chloride 0.6 mM +1.2 N.D. N.D. N.D. N.D.
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days +1.3 N.D. N.D. N.D. N.D.
stress Cobalt chloride 0.2 mM +1.4 N.D. N.D. N.D. N.D.
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