Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS17830	HSERO_RS17835	HSERO_RS17840	HSERO_RS17845	HSERO_RS17850
carbon source	D-Mannose (C)	-1.1	-0.0	+0.1	-0.3	-1.4
plant	Control soil assay; outgrowth in LB	-0.7	-0.1	-0.3	-0.4	-0.8
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.7	-0.3	-0.3	-0.2	+0.4
carbon source	D-Glucose (C)	-0.7	+0.6	+0.5	-0.6	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	-0.0	-0.7	-0.0	-0.6
carbon source	L-Rhamnose (C)	-1.2	+0.2	+0.3	-0.2	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	+0.1	+0.7	-0.2	-0.9
nutrient	Min media with glucose	-1.2	+0.5	+0.2	+0.2	+0.1
carbon source	D-Xylose (C)	-0.8	+1.0	+0.4	-0.1	-0.4
carbon source	L-Arabinose (C)	-0.6	+0.6	+0.6	+0.1	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	+0.6	+0.6	-0.1	-0.4
control	NoPredeControl	+0.1	+0.9	+0.2	+0.1	-0.7
carbon source	pyruvate (C)	-0.7	+0.5	+0.4	-0.0	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+0.2	-0.3	+0.2	+0.9
carbon source	L-Proline (C)	-0.7	+0.5	+0.6	-0.1	+0.3
carbon source	a-Ketoglutaric (C)	-0.6	+0.8	+0.5	-0.0	-0.1
carbon source	D-Glucose (C)	+0.2	+0.7	+0.6	-0.5	-0.4
carbon source	D-Gluconic Acid (C)	-0.4	+0.6	+0.1	-0.1	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.7	+0.4	+1.0	+0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+1.4	+0.0	-0.4	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	+0.3	+0.1	+1.1	-0.4
carbon source	L-Malic (C)	-0.8	+0.9	+0.4	+0.1	+0.5
carbon source	Glycerol (C)	-0.3	+1.0	+0.4	-0.1	+0.3
carbon source	Xylitol (C)	-0.3	+0.4	+0.6	-0.1	+0.7
carbon source	L-Fucose (C)	+0.6	+0.5	+0.2	-0.3	+0.5
micoeukaryotes	Dictyostellum sp.mixed culture-1	+0.8	+0.3	+0.1	-0.1	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.2	+0.1	+0.1	-0.0	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+1.8	-0.1	+0.3	-0.4	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+2.2	+0.1	+0.4	+0.0	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.6	+1.0	+0.3	+0.1	+0.6