Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS17765 and HSERO_RS17770 overlap by 1 nucleotidesHSERO_RS17770 and HSERO_RS17775 are separated by 4 nucleotidesHSERO_RS17775 and HSERO_RS17780 overlap by 1 nucleotidesHSERO_RS17780 and HSERO_RS17785 are separated by 55 nucleotides HSERO_RS17765: HSERO_RS17765 - coproporphyrinogen III oxidase, at 4,082,351 to 4,083,271 _RS17765 HSERO_RS17770: HSERO_RS17770 - nicotinate-nucleotide adenylyltransferase, at 4,083,271 to 4,083,936 _RS17770 HSERO_RS17775: HSERO_RS17775 - hypothetical protein, at 4,083,941 to 4,084,711 _RS17775 HSERO_RS17780: HSERO_RS17780 - 50S rRNA methyltransferase, at 4,084,711 to 4,085,181 _RS17780 HSERO_RS17785: HSERO_RS17785 - septum formation inhibitor Maf, at 4,085,237 to 4,085,851 _RS17785
Group Condition HSERO_RS17765 HSERO_RS17770 HSERO_RS17775 HSERO_RS17780 HSERO_RS17785
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. -1.3 N.D. -0.3 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -1.8 N.D. -0.1 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -1.6 N.D. -0.1 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -1.3 N.D. -0.5 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -1.1 N.D. -0.5 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -1.3 N.D. -0.2 -0.1
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days N.D. -0.9 N.D. -0.4 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -1.5 N.D. -0.2 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.7 N.D. -0.2 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.9 N.D. +0.0 -0.5
carbon source D-Glucose-6-Phosphate (C) N.D. -1.0 N.D. +0.3 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -1.1 N.D. -0.2 +0.2
supernatant control Vogels_fungal_media; pH 5.5 N.D. -0.6 N.D. -0.6 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -1.3 N.D. -0.1 +0.5
carbon source D-Galactose (C) N.D. -0.7 N.D. +0.3 -0.5
carbon source D-Lactate (C) N.D. -0.8 N.D. +0.3 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.0 N.D. -0.1 +0.3
carbon source D-Glucose (C) N.D. -0.8 N.D. +0.5 -0.4
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. -0.5 N.D. -0.6 +0.4
carbon source D-Gluconic Acid (C) N.D. -1.1 N.D. +0.7 -0.3
carbon source D-Glucose (C) N.D. -0.7 N.D. +0.4 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -1.0 N.D. +0.4 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.1 N.D. +0.2 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -1.1 N.D. +0.1 +0.5
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days N.D. -0.9 N.D. +0.3 +0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. -1.0 N.D. +0.2 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -1.1 N.D. +1.0 -0.0
vitamin With vitamins t2 N.D. -0.8 N.D. +0.3 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.9 N.D. +1.5 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +1.4 N.D. +0.2 -0.1
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