Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS17640	HSERO_RS17645	HSERO_RS17650	HSERO_RS17655	HSERO_RS17660
vitamin	With vitamins t2	-0.2	-0.2	-0.3	-0.2	-0.4
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	-0.5	-0.4	-0.5	+0.3	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9	+0.1	+0.0	+0.0	-0.2
carbon source	L-Fucose (C)	-0.8	-0.1	+0.4	+0.1	-0.4
plant	Control soil assay; outgrowth in LB	-0.3	+0.2	-0.4	+0.1	-0.2
carbon source	D-Sorbitol (C)	-0.5	-0.2	+0.1	+0.2	-0.4
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.6	+0.0	+0.1	+0.2	-0.5
carbon source	Glycerol (C)	-0.9	-0.1	+0.1	+0.2	+0.1
carbon source	Glycerol (C)	-0.9	+0.1	+0.2	+0.2	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6	+0.3	-0.4	+0.0	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.8	+0.6	-0.1	-0.0	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	+0.1	+0.2	+0.1	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.5	+0.2	+0.3	+0.1	+0.3
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.5	+0.6	+0.2	+0.1	+0.1
stress	Cobalt chloride 0.2 mM	-0.3	+0.4	+0.2	+0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	+0.3	+0.0	+0.2	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	+0.3	+0.3	+0.2	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	+0.6	-0.2	+0.1	+0.2
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 8 days	+1.2	-0.1	-0.1	+0.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	+0.2	+0.3	+0.3	+0.4
stress	Sisomicin 0.125 mg/ml	+0.8	-0.3	+0.4	+0.2	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	+0.4	+0.4	+0.2	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	+0.6	-0.1	+0.3	+0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	+0.4	+0.1	+0.2	+0.1	+0.6
agar plate interaction control	Taped volatile agar plate with no fungus	+0.3	+0.3	+0.0	+0.3	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	+0.2	+0.6	+0.4	+0.2
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.0	+1.1	+0.6	+0.1	-0.2
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.1	+0.7	+1.1	-0.1	+0.1
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.3	+1.2	+1.7	+0.0	-0.5
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	+0.5	+1.4	+1.1	+0.5	+0.0