Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS17435	HSERO_RS17440	HSERO_RS17445	HSERO_RS17450	HSERO_RS17455
r2a control	R2A control	-0.5	-0.4	-0.3	-0.5	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	-0.4	-0.3	-0.3	-0.5
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.2	-0.4	-0.4	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	-0.4	-0.2	-0.0	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	-0.1	-0.4	-0.3	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4	-0.3	-0.4	-0.0	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-0.1	-0.3	-0.5	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	-0.2	-0.3	-0.3	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.3	-0.3	-0.2	-0.3	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.2	-0.2	-0.2	-0.2	-0.4
agar plate interaction control	Taped volatile agar plate with no fungus	-0.6	+0.0	-0.2	-0.3	-0.1
r2a control	R2A control	-0.3	-0.1	-0.2	-0.2	-0.4
stress	Lomefloxacin 0.012 mM	-0.6	-0.2	-0.1	-0.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	-0.2	-0.1	-0.2	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.1	-0.2	-0.2	-0.2	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.4	-0.2	-0.1	-0.1	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4	-0.1	-0.0	-0.2	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.2	-0.1	-0.2	-0.2	-0.3
r2a control	R2A control	-0.3	-0.2	-0.1	-0.1	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	-0.2	-0.0	-0.2	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-0.3	-0.3	-0.1	-0.2
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	-0.2	-0.2	-0.1	-0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.0	-0.1	-0.2	-0.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-0.2	-0.0	-0.2	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.0	-0.3	+0.1	-0.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4	-0.2	+0.0	-0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.3	-0.1	+0.1	-0.5
agar plate interaction control	Taped volatile agar plate with no fungus	-0.2	+0.2	-0.2	-0.3	-0.1
stress	Sisomicin 0.125 mg/ml	-0.1	-0.3	-0.3	+0.1	+0.1
carbon source	Carbon source 2-Deoxy-D-Ribose 5 mM	+0.4	-0.0	+0.1	-0.1	-0.4