Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS17310 and HSERO_RS17315 are separated by 26 nucleotidesHSERO_RS17315 and HSERO_RS17320 are separated by 175 nucleotidesHSERO_RS17320 and HSERO_RS17325 are separated by 94 nucleotidesHSERO_RS17325 and HSERO_RS17330 are separated by 132 nucleotides HSERO_RS17310: HSERO_RS17310 - hypothetical protein, at 3,965,804 to 3,967,255 _RS17310 HSERO_RS17315: HSERO_RS17315 - ATP-dependent helicase, at 3,967,282 to 3,971,349 _RS17315 HSERO_RS17320: HSERO_RS17320 - amino acid acetyltransferase, at 3,971,525 to 3,972,847 _RS17320 HSERO_RS17325: HSERO_RS17325 - iron transporter, at 3,972,942 to 3,973,214 _RS17325 HSERO_RS17330: HSERO_RS17330 - pseudouridine synthase, at 3,973,347 to 3,976,121 _RS17330
Group Condition HSERO_RS17310 HSERO_RS17315 HSERO_RS17320 HSERO_RS17325 HSERO_RS17330
stress Fusidic 0.025 mg/ml +0.2 -2.5 N.D. N.D. -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 -0.2 N.D. N.D. -0.3
agar plate interaction control Taped volatile agar plate with no fungus -0.4 -0.2 N.D. N.D. -0.1
stress Cobalt chloride 0.2 mM -0.0 -0.7 N.D. N.D. +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.2 -0.2 N.D. N.D. -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.0 -0.4 N.D. N.D. -0.2
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days +0.0 -0.6 N.D. N.D. +0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 -0.3 N.D. N.D. -0.2
r2a control R2A control -0.1 -0.2 N.D. N.D. -0.2
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days +0.1 -0.5 N.D. N.D. -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 +0.1 N.D. N.D. -0.3
carbon source D-Glucose (C) +0.2 -0.3 N.D. N.D. -0.3
agar plate interaction control Taped volatile agar plate with no fungus -0.3 -0.2 N.D. N.D. +0.1
stress Lomefloxacin 0.012 mM -0.3 -0.1 N.D. N.D. +0.2
stress Sisomicin 0.125 mg/ml -0.2 -0.1 N.D. N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 -0.2 N.D. N.D. -0.1
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.0 -0.2 N.D. N.D. +0.3
control NoPredeControl +0.3 +0.2 N.D. N.D. -0.4
carbon source D,L-Lactate (C) +0.3 -0.2 N.D. N.D. -0.0
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days +0.1 -0.2 N.D. N.D. +0.3
carbon source D-Mannose (C) +0.2 -0.2 N.D. N.D. +0.1
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days +0.0 -0.3 N.D. N.D. +0.4
stress nitrate 200 mM +0.4 -0.1 N.D. N.D. -0.1
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.2 -0.2 N.D. N.D. +0.1
carbon source D-Glucose-6-Phosphate (C) +0.3 -0.2 N.D. N.D. +0.1
carbon source D-Galactose (C) +0.3 -0.2 N.D. N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 -0.0 N.D. N.D. -0.1
carbon source D-Gluconic Acid (C) +0.3 -0.1 N.D. N.D. +0.2
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.6 -0.2 N.D. N.D. +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 +0.2 N.D. N.D. +0.3
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