Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS17230 and HSERO_RS17235 are separated by 328 nucleotidesHSERO_RS17235 and HSERO_RS17240 are separated by 86 nucleotidesHSERO_RS17240 and HSERO_RS17245 are separated by 157 nucleotidesHSERO_RS17245 and HSERO_RS17250 are separated by 61 nucleotides HSERO_RS17230: HSERO_RS17230 - transcriptional regulator, at 3,946,219 to 3,946,923 _RS17230 HSERO_RS17235: HSERO_RS17235 - 3-ketoacyl-ACP reductase, at 3,947,252 to 3,948,037 _RS17235 HSERO_RS17240: HSERO_RS17240 - hypothetical protein, at 3,948,124 to 3,949,056 _RS17240 HSERO_RS17245: HSERO_RS17245 - thymidylate synthase, at 3,949,214 to 3,950,185 _RS17245 HSERO_RS17250: HSERO_RS17250 - 2-nitropropane dioxygenase, at 3,950,247 to 3,951,317 _RS17250
Group Condition HSERO_RS17230 HSERO_RS17235 HSERO_RS17240 HSERO_RS17245 HSERO_RS17250
carbon source D-Ribose (C) -1.1 -0.1 -0.2 N.D. -0.2
carbon source D-Lactate (C) -0.8 +0.0 +0.0 N.D. -0.5
carbon source D-Mannose (C) -0.4 -0.6 -0.0 N.D. -0.1
plant Control soil assay; outgrowth in LB -0.7 -0.1 +0.0 N.D. -0.2
carbon source L-Asparagine (C) +0.2 -0.3 -0.2 N.D. -0.7
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.2 -0.1 -0.5 N.D. -0.3
carbon source D-Glucose-6-Phosphate (C) -0.7 -0.2 +0.1 N.D. -0.3
stress Lomefloxacin 0.012 mM +0.1 -0.7 -0.4 N.D. +0.1
carbon source D-Glucose (C) -0.5 +0.1 -0.3 N.D. -0.2
stress Cisplatin 0.003 mg/ml +0.2 -0.5 -0.1 N.D. -0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.4 -0.6 +0.5 N.D. -0.3
carbon source L-Arabinose (C) -0.7 +0.1 -0.3 N.D. +0.1
nitrogen source L-Proline (N) +0.2 -0.4 -0.1 N.D. -0.4
agar plate interaction control Taped volatile agar plate with no fungus -0.1 -0.5 -0.3 N.D. +0.2
carbon source Glycerol (C) -0.4 +0.3 -0.0 N.D. -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.1 +0.4 -0.3 N.D. -0.4
carbon source L-Proline (C) +0.2 -0.4 +0.2 N.D. -0.4
carbon source L-Fucose (C) +0.0 -0.6 +0.4 N.D. +0.1
carbon source D-Gluconic Acid (C) -0.5 -0.2 +0.5 N.D. +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -0.1 +0.4 N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 +0.2 -0.1 N.D. +0.4
carbon source D-Galactose (C) -0.5 +0.2 +0.5 N.D. -0.2
carbon source D-Lactate (C) -0.3 -0.2 +0.5 N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 -0.1 -0.0 N.D. -0.3
micoeukaryotes C.elegans, mixed culture-1 +0.1 +0.4 -0.3 N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 -0.0 -0.2 N.D. +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 +0.3 -0.3 N.D. +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 +0.6 +0.8 N.D. -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.3 +0.2 +0.5 N.D. +0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.8 +0.7 -0.0 N.D. +0.5
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