Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS16890	HSERO_RS16895	HSERO_RS16900	HSERO_RS16905	HSERO_RS16910
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.4	N.D.	-0.2	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-0.1	N.D.	-1.0	-0.1
agar plate interaction control	Taped volatile agar plate with no fungus	-0.2	-0.1	N.D.	-0.9	+0.2
control	NoPredeControl	-0.9	-0.5	N.D.	+0.7	+0.0
stress	Lomefloxacin 0.012 mM	-0.5	-0.2	N.D.	+0.4	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6	+0.4	N.D.	-0.3	+0.1
stress	nitrate 200 mM	-0.3	-0.2	N.D.	-0.3	+0.4
carbon source	L-Fucose (C)	-0.7	-0.1	N.D.	+0.3	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	-0.6	N.D.	-0.3	-0.1
carbon source	D-Mannose (C)	+0.1	-0.3	N.D.	+0.6	-0.3
carbon source	D-Xylose (C)	-0.2	-0.1	N.D.	+0.7	-0.2
carbon source	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM	+0.5	-0.4	N.D.	+0.4	-0.2
carbon source	D-Lactate (C)	+0.1	-0.1	N.D.	+0.6	-0.4
carbon source	L-Lactate (C)	+0.3	+0.3	N.D.	+0.3	-0.6
nutrient	Min media with glucose	-0.1	+0.3	N.D.	-0.4	+0.5
stress	Cisplatin 0.003 mg/ml	-0.4	+0.1	N.D.	+0.7	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.5	+0.3	N.D.	-0.4	+0.2
carbon source	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM	+0.6	-0.3	N.D.	+0.2	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.3	N.D.	+0.8	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	+0.2	N.D.	+0.8	-0.2
stress	Fusidic 0.025 mg/ml	-0.2	+0.4	N.D.	+0.0	+0.7
stress	Sisomicin 0.125 mg/ml	-0.2	-0.3	N.D.	+0.5	+0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.8	N.D.	+0.0	+0.4
carbon source	a-Ketoglutaric (C)	+0.4	-0.2	N.D.	+0.8	+0.4
carbon source	a-Ketoglutaric (C)	+0.3	+0.0	N.D.	+1.0	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	+0.2	N.D.	+0.2	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	+0.7	N.D.	+0.4	+0.3
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.1	+0.3	N.D.	+0.2	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	+0.8	N.D.	+0.4	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	+0.2	N.D.	+1.1	+0.2