Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS16655 and HSERO_RS16660 are separated by 207 nucleotidesHSERO_RS16660 and HSERO_RS16665 are separated by 36 nucleotidesHSERO_RS16665 and HSERO_RS16670 are separated by 419 nucleotidesHSERO_RS16670 and HSERO_RS16675 are separated by 3 nucleotides HSERO_RS16655: HSERO_RS16655 - ABC transporter ATP-binding protein, at 3,812,664 to 3,813,437 _RS16655 HSERO_RS16660: HSERO_RS16660 - NAD-dependent dehydratase, at 3,813,645 to 3,814,526 _RS16660 HSERO_RS16665: HSERO_RS16665 - CDP-6-deoxy-delta-3,4-glucoseen reductase, at 3,814,563 to 3,815,612 _RS16665 HSERO_RS16670: HSERO_RS16670 - acetylornithine aminotransferase, at 3,816,032 to 3,817,234 _RS16670 HSERO_RS16675: HSERO_RS16675 - hypothetical protein, at 3,817,238 to 3,817,807 _RS16675
Group Condition HSERO_RS16655 HSERO_RS16660 HSERO_RS16665 HSERO_RS16670 HSERO_RS16675
nitrogen source nitrate (N); high aeration -0.0 -4.1 +0.1 N.D. -0.0
nitrogen source nitrate (N); low aeration -0.3 -4.3 +0.3 N.D. +0.3
nitrogen source nitrate (N); high aeration -0.1 -3.5 +0.1 N.D. +0.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.1 -2.1 +0.3 N.D. -1.1
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days +0.0 -2.7 -0.0 N.D. -0.2
carbon source L-Glutamine (C) -0.3 -2.1 -0.1 N.D. -0.2
nitrogen source nitrate (N); low aeration -0.3 -2.8 +0.3 N.D. +0.2
carbon source L-Malic (C) -0.5 -1.0 -0.0 N.D. -0.7
supernatant control Vogels_fungal_media; pH 5.5 -0.2 -1.6 +0.1 N.D. -0.5
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days +0.0 -2.2 -0.0 N.D. -0.1
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -0.1 -2.2 +0.1 N.D. -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.1 -3.0 +0.4 N.D. +0.4
stress Sisomicin 0.125 mg/ml -0.4 -0.5 -0.1 N.D. -1.1
stress Cobalt chloride 0.2 mM -0.2 -0.0 -1.9 N.D. +0.1
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days +0.2 -2.2 -0.1 N.D. +0.4
carbon source L-Lactate (C) +0.3 -1.1 -0.1 N.D. -0.9
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.0 -1.9 +0.3 N.D. -0.1
plant Control soil assay; outgrowth in LB -0.5 -0.3 -1.1 N.D. +0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.4 -2.4 +0.3 N.D. +0.3
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days -0.0 -1.7 -0.2 N.D. +0.6
carbon source D-Xylose (C) -0.6 -1.2 +0.3 N.D. +0.3
carbon source D,L-Lactate (C) +0.3 -0.6 -0.6 N.D. +0.4
stress sodium fluoride 100 mM +0.1 -0.6 +1.0 N.D. -0.6
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.2 -0.5 -0.4 N.D. +1.0
control NoPredeControl +0.4 +0.7 -0.3 N.D. -0.8
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.1 -0.5 -0.7 N.D. +1.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +0.4 +0.1 N.D. +0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.9 +0.7 +0.4 N.D. -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.6 +0.2 +0.0 N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 -0.3 -0.0 N.D. +3.3
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