Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 244 experiments or choose conditions or try the comparative fitness browser

500 ntHSERO_RS16370 and HSERO_RS16375 are separated by 185 nucleotidesHSERO_RS16375 and HSERO_RS16380 are separated by 379 nucleotidesHSERO_RS16380 and HSERO_RS16385 are separated by 16 nucleotidesHSERO_RS16385 and HSERO_RS16390 are separated by 18 nucleotides HSERO_RS16370: HSERO_RS16370 - peptidyl-prolyl cis-trans isomerase, at 3,748,889 to 3,749,431 _RS16370 HSERO_RS16375: HSERO_RS16375 - cupin, at 3,749,617 to 3,750,777 _RS16375 HSERO_RS16380: HSERO_RS16380 - hypothetical protein, at 3,751,157 to 3,751,744 _RS16380 HSERO_RS16385: HSERO_RS16385 - beta-lactamase, at 3,751,761 to 3,752,546 _RS16385 HSERO_RS16390: HSERO_RS16390 - lipoprotein, at 3,752,565 to 3,753,746 _RS16390
Group Condition HSERO_RS16370 HSERO_RS16375 HSERO_RS16380 HSERO_RS16385 HSERO_RS16390
agar plate interaction control Parafilmed volatile agar plate with no fungus -5.4 -0.0 -0.3 -0.8 N.D.
control NoPredeControl -4.4 -0.1 -0.4 -0.9 N.D.
carbon source L-Rhamnose (C) -1.2 +0.3 -0.1 -2.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.3 -0.4 -0.6 -0.7 N.D.
agar plate interaction control Taped volatile agar plate with no fungus -2.2 +0.2 -0.2 -0.6 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.0 -0.7 -0.4 -0.6 N.D.
agar plate interaction control Taped volatile agar plate with no fungus -2.0 -0.2 -0.5 +0.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 -0.3 -0.0 -1.6 N.D.
supernatant control Vogels_fungal_media 0.1X -2.1 -0.2 -0.3 +0.1 N.D.
stress nitrite 20 mM -1.9 +0.2 +0.1 -0.8 N.D.
carbon source pyruvate (C) -2.1 +0.0 +0.2 -0.5 N.D.
micoeukaryotes C.elegans, mixed culture-2 -1.4 -0.7 +0.4 -0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.2 -0.2 -0.4 +0.7 N.D.
supernatant control Vogels_fungal_media; pH 5.5 -2.1 -0.5 +0.4 -0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.3 -0.5 -0.5 +0.3 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -1.8 -0.7 +0.0 +0.7 N.D.
carbon source D-Glucose (C) -1.0 +0.5 -0.6 -0.5 N.D.
carbon source D-Glucose (C) -1.2 +0.5 -0.1 -0.6 N.D.
carbon source L-Asparagine (C) -1.2 +0.2 +0.5 -0.6 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -1.3 -0.5 +0.2 +0.7 N.D.
carbon source Xylitol (C) +0.2 +0.3 +0.5 -2.0 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 +0.0 +0.7 -0.9 N.D.
carbon source Xylitol (C) -1.7 +0.3 +0.3 +0.4 N.D.
carbon source D-Lactate (C) +0.4 -0.0 +0.7 -1.3 N.D.
carbon source D-Galacturonic Acid (C) -0.8 +0.5 +0.8 -0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.4 -0.0 +0.2 +1.1 N.D.
carbon source L-Arabinose (C) +1.9 +0.4 -0.1 -0.8 N.D.
vitamin With vitamins t2 +1.8 -0.5 +0.1 +0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +2.3 +0.0 +0.3 -0.3 N.D.
vitamin With vitamins t1 +1.8 -0.2 +0.2 +0.8 N.D.
remove
HSERO_RS16370
plot		 remove
HSERO_RS16375
plot		 remove
HSERO_RS16380		 remove
HSERO_RS16385
plot		 remove
HSERO_RS16390
plot