Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS16115	HSERO_RS16120	HSERO_RS16125	HSERO_RS16130	HSERO_RS16135
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.3	-0.6	-0.7	-0.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5	-0.3	-0.3	-0.3	N.D.
micoeukaryotes	Dictyostellum sp.mixed culture-2	-1.3	+0.1	+0.1	-0.2	N.D.
micoeukaryotes	Dictyostellum sp.mixed culture-1	-1.2	-0.0	+0.0	-0.0	N.D.
r2a control	R2A control	-0.6	-0.2	-0.2	-0.3	N.D.
carbon source	D-Glucose (C)	-1.1	+0.0	+0.1	-0.1	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-0.4	-0.3	-0.2	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	-0.3	-0.1	-0.2	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	-0.4	-0.4	-0.2	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.8	+0.1	+0.1	-0.3	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.3	-0.3	-0.1	N.D.
carbon source	D-Galactose (C)	-0.9	-0.1	+0.1	+0.0	N.D.
micoeukaryotes	C.elegans, mixed culture-2	-1.0	+0.2	-0.1	+0.0	N.D.
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.6	-0.2	+0.1	-0.2	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.1	-0.1	-0.3	-0.5	N.D.
nitrogen fixation	D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days	-1.0	+0.3	+0.0	+0.1	N.D.
micoeukaryotes	Acanthamoeba sp., muxed culture-2	-0.6	+0.1	-0.1	-0.0	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.8	+0.1	+0.0	+0.0	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	-0.4	-0.0	+0.1	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.3	-0.3	-0.1	N.D.
carbon source	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM	-0.7	+0.0	-0.1	+0.1	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.4	-0.2	-0.0	+0.2	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	+0.3	-0.2	-0.4	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.4	-0.4	-0.2	-0.0	N.D.
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	-0.6	+0.3	+0.1	+0.1	N.D.
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	+0.4	-0.4	-0.0	+0.2	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	+0.1	-0.1	+0.3	N.D.
plant	Control soil assay; outgrowth in LB	-0.1	+0.4	+0.3	+0.2	N.D.
carbon source	L-Asparagine (C)	+0.2	+0.4	+0.4	+0.3	N.D.
control	NoPredeControl	+1.1	+0.2	-0.0	+0.1	N.D.