Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS16085	HSERO_RS16090	HSERO_RS16095	HSERO_RS16100	HSERO_RS16105
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.4	+0.0	-0.2	-1.4
carbon source	D-Ribose (C)	+0.2	+0.0	+0.6	-1.0	-1.6
carbon source	D-Glucose-6-Phosphate (C)	-0.1	-0.1	+0.0	-1.0	-0.6
agar plate interaction control	Taped volatile agar plate with no fungus	-0.1	-0.2	-0.3	-0.1	-0.9
carbon source	D-Galactose (C)	+0.1	-0.5	-0.2	-0.5	-0.5
carbon source	D-Gluconic Acid (C)	-0.0	+0.1	+0.1	-0.8	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.0	+0.2	-0.2	-0.2	-1.3
carbon source	Xylitol (C)	+0.1	-0.1	+0.3	-1.0	-0.8
carbon source	Xylitol (C)	+0.0	-0.2	+0.3	-0.9	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.0	+0.3	-0.1	-0.2	-1.1
carbon source	D-Ribose (C)	+0.0	+0.4	+0.2	-1.2	-0.5
carbon source	D-Gluconic Acid (C)	+0.2	+0.2	+0.0	-0.6	-0.9
carbon source	D-Glucose-6-Phosphate (C)	+0.2	+0.1	+0.2	-0.7	-0.7
carbon source	D-Glucose (C)	+0.1	+0.3	-0.1	-0.2	-1.1
carbon source	succinate (C)	+0.2	+0.1	+0.2	-0.3	-0.9
carbon source	L-Rhamnose (C)	+0.6	-0.4	+0.1	-0.5	-0.4
carbon source	L-Rhamnose (C)	+0.3	+0.3	-0.2	-0.1	-0.8
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.3	-0.3	+0.3	-0.6	-0.3
carbon source	m-Inositol (C)	+0.3	+0.4	+0.4	-0.8	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.1	+0.6	-0.1	-0.7
carbon source	D,L-Lactate (C)	-0.1	+0.1	-0.1	-0.8	+0.6
micoeukaryotes	C.elegans, mixed culture-2	+0.5	-0.7	+0.1	+0.8	-0.9
control	NoPredeControl	+0.4	+0.0	-0.3	+0.8	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	-0.3	+1.1	-0.3	-0.8
vitamin	No vitamins t2	+0.2	+0.3	-0.4	-0.3	+0.6
carbon source	succinate (C)	+0.2	+0.1	+0.5	+0.3	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.0	-0.4	+0.5	+1.4	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.4	+0.4	-0.0	+1.6
plant	Control soil assay; outgrowth in LB	-0.0	+0.3	+0.3	+0.3	+0.8
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+0.1	+0.5	-0.0	+0.9	+0.3