Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS15870	HSERO_RS15875	HSERO_RS15880	HSERO_RS15885	HSERO_RS15890
stress	Chloride stress	-0.8	-0.9	-0.8	-0.5	-0.2
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 8 days	-0.5	-0.8	-0.3	-0.6	-0.5
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	-0.7	-0.4	-0.3	-0.4	-0.5
carbon source	L-mannose (C)	-0.7	-0.4	-0.5	-0.1	-0.4
vitamin	No vitamins t1	-0.7	-0.7	-0.3	-0.1	-0.0
carbon source	D-Lactate (C)	-0.6	-0.6	-0.5	+0.0	-0.2
carbon source	Carbon source Phenylacetic 5 mM	-0.6	-0.0	-0.4	-0.3	-0.4
carbon source	D-Xylose (C)	-0.7	+0.0	-0.3	-0.2	-0.5
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 3 days	-0.4	-0.6	-0.4	-0.4	+0.1
carbon source	Glycerol (C)	-0.6	-1.0	-0.5	-0.0	+0.5
carbon source	D,L-Malic Acid (C)	-0.8	-0.4	+0.1	-0.4	-0.2
supernatant control	Vogels_fungal_media; pH 5.5	-0.7	-0.9	-0.1	-0.1	+0.3
stress	Cisplatin 0.003 mg/ml	-0.2	-1.3	-0.5	+0.2	+0.3
stress	Nickel (II) chloride 0.6 mM	-0.1	-0.8	-0.6	-0.3	+0.4
carbon source	D-Lactate (C)	-0.5	-0.2	-0.4	-0.4	+0.2
plant	Control soil assay; outgrowth in LB	-0.4	-0.5	-0.1	-0.5	+0.2
stress	Sisomicin 0.125 mg/ml	-0.2	-0.3	-0.9	-0.3	+0.4
stress	nitrite 20 mM	-0.2	-1.3	-0.3	+0.2	+0.4
carbon source	Carbon source 2-Deoxy-D-Ribose 5 mM	-0.4	-0.4	-0.4	-0.3	+0.4
stress	A22 0.04 mg/ml	-0.4	-0.7	-0.3	-0.1	+0.6
stress	Lomefloxacin 0.012 mM	-0.1	-0.5	-0.4	-0.3	+0.6
carbon source	L-Rhamnose (C)	-0.4	+0.4	-0.6	-0.2	+0.4
carbon source	D-Galactose (C)	-0.5	+0.3	-0.5	+0.0	+0.5
carbon source	Xylitol (C)	-0.6	+0.1	-0.3	+0.2	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.3	+0.7	-0.4	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	-0.4	+0.1	+0.1	+0.8
control	NoPredeControl	-0.4	+0.7	+0.5	+0.1	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.2	-0.4	-0.1	+0.4	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.0	+1.7	+0.1	+0.1	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.9	+0.6	+0.3	+0.4	+0.3