Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS15845 and HSERO_RS15850 are separated by 13 nucleotidesHSERO_RS15850 and HSERO_RS15855 are separated by 463 nucleotidesHSERO_RS15855 and HSERO_RS15860 are separated by 97 nucleotidesHSERO_RS15860 and HSERO_RS15865 are separated by 237 nucleotides HSERO_RS15845: HSERO_RS15845 - uracil DNA glycosylase, at 3,618,226 to 3,619,026 _RS15845 HSERO_RS15850: HSERO_RS15850 - methyl-accepting chemotaxis protein, at 3,619,040 to 3,621,094 _RS15850 HSERO_RS15855: HSERO_RS15855 - hypothetical protein, at 3,621,558 to 3,621,818 _RS15855 HSERO_RS15860: HSERO_RS15860 - LysR family transcriptional regulator, at 3,621,916 to 3,622,854 _RS15860 HSERO_RS15865: HSERO_RS15865 - antibiotic biosynthesis monooxygenase, at 3,623,092 to 3,623,409 _RS15865
Group Condition HSERO_RS15845 HSERO_RS15850 HSERO_RS15855 HSERO_RS15860 HSERO_RS15865
carbon source D-Mannose (C) N.D. -0.2 N.D. -0.2 -1.0
carbon source Carbon source Phenylacetic 5 mM N.D. -0.4 N.D. -0.5 -0.5
carbon source D-Glucose (C) N.D. -0.2 N.D. -0.4 -0.8
carbon source Carbon source Phenylacetic 5 mM N.D. -0.4 N.D. -0.0 -0.9
supernatant control Vogels_fungal_media; pH 5.5 N.D. +0.0 N.D. -0.3 -0.9
carbon source L-Proline (C) N.D. -0.0 N.D. -0.6 -0.6
carbon source D-Galactose (C) N.D. +0.1 N.D. -0.1 -1.2
carbon source L-Fucose (C) N.D. +0.0 N.D. -0.5 -0.6
carbon source D-Ribose (C) N.D. +0.0 N.D. -0.2 -0.9
vitamin With vitamins t2 N.D. +0.1 N.D. -0.6 -0.5
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM N.D. -0.4 N.D. -0.3 -0.3
stress Chloride stress N.D. -0.3 N.D. -0.4 -0.3
carbon source Carbon source D-Glucose 20 mM N.D. -0.5 N.D. +0.1 -0.5
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. +0.3 N.D. -0.2 -0.9
stress nitrite 20 mM N.D. +0.0 N.D. +0.2 -1.0
carbon source D-Galactose (C) N.D. +0.2 N.D. -0.2 -0.6
stress sodium fluoride 100 mM N.D. -0.0 N.D. +0.3 -0.8
carbon source L-Glutamine (C) N.D. +0.1 N.D. +0.2 -0.8
stress A22 0.02 mg/ml N.D. +0.1 N.D. +0.4 -0.8
carbon source a-Ketoglutaric (C) N.D. +0.2 N.D. +0.2 -0.7
carbon source pyruvate (C) N.D. +0.2 N.D. +0.3 -0.7
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days N.D. +0.2 N.D. +0.4 -0.4
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. -0.2 N.D. -0.2 +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.3 N.D. +0.3 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.1 N.D. +0.7 +0.3
agar plate interaction control Taped volatile agar plate with no fungus N.D. +0.4 N.D. -0.2 +0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.4 N.D. +0.5 +0.3
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI N.D. +0.2 N.D. +0.3 +0.8
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days N.D. +0.1 N.D. +0.6 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.1 N.D. +1.1 +0.1
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