Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS15820 and HSERO_RS15825 are separated by 284 nucleotidesHSERO_RS15825 and HSERO_RS15830 are separated by 180 nucleotidesHSERO_RS15830 and HSERO_RS15835 are separated by 128 nucleotidesHSERO_RS15835 and HSERO_RS15840 are separated by 422 nucleotides HSERO_RS15820: HSERO_RS15820 - selenide, water dikinase, at 3,612,639 to 3,613,673 _RS15820 HSERO_RS15825: HSERO_RS15825 - tRNA-Asn, at 3,613,958 to 3,614,033 _RS15825 HSERO_RS15830: HSERO_RS15830 - tRNA-Asn, at 3,614,214 to 3,614,289 _RS15830 HSERO_RS15835: HSERO_RS15835 - aspartate aminotransferase, at 3,614,418 to 3,615,635 _RS15835 HSERO_RS15840: HSERO_RS15840 - excinuclease ABC subunit B, at 3,616,058 to 3,618,139 _RS15840
Group Condition HSERO_RS15820 HSERO_RS15825 HSERO_RS15830 HSERO_RS15835 HSERO_RS15840
stress Cisplatin 0.003 mg/ml +0.7 N.D. N.D. +0.0 -5.6
carbon source L-Glutamine (C) +0.1 N.D. N.D. -3.5 -1.3
carbon source L-Glutamine (C) +0.1 N.D. N.D. -3.6 -1.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.4 N.D. N.D. -3.3 -0.4
carbon source D-Galactose (C) -0.1 N.D. N.D. -3.5 -0.3
carbon source Glycerol (C) +0.2 N.D. N.D. -3.5 -0.4
carbon source D-Glucose (C) +0.2 N.D. N.D. -3.5 -0.4
plant Control soil assay; outgrowth in LB +0.1 N.D. N.D. -3.5 -0.0
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB +0.0 N.D. N.D. -3.2 -0.2
carbon source L-Asparagine (C) +0.4 N.D. N.D. -3.2 -0.5
carbon source D-Gluconic Acid (C) -0.1 N.D. N.D. -3.5 +0.2
carbon source Glycerol (C) +0.1 N.D. N.D. -2.5 -1.0
carbon source D-Mannitol (C) -0.0 N.D. N.D. -2.8 -0.5
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.2 N.D. N.D. -2.5 -0.9
carbon source D,L-Lactate (C) +0.2 N.D. N.D. -3.1 -0.2
control NoPredeControl -0.4 N.D. N.D. -2.5 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 N.D. N.D. -3.1 -0.3
carbon source L-Proline (C) +0.3 N.D. N.D. -2.8 -0.6
carbon source D-Lactate (C) +0.1 N.D. N.D. -2.2 -0.8
nutrient L-Serine +0.2 N.D. N.D. -3.0 +0.0
carbon source L-Lactate (C) -0.4 N.D. N.D. -2.5 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 N.D. N.D. -2.5 -0.5
carbon source L-Proline (C) +0.3 N.D. N.D. -2.9 -0.0
micoeukaryotes C.elegans, mixed culture-2 -0.6 N.D. N.D. -2.3 +0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.4 N.D. N.D. -3.2 +0.2
carbon source D,L-Lactate (C) +0.3 N.D. N.D. -2.6 -0.4
carbon source L-Asparagine (C) +0.3 N.D. N.D. -2.6 -0.1
stress sodium fluoride 100 mM +0.5 N.D. N.D. -0.4 -2.4
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days +0.5 N.D. N.D. -2.1 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 N.D. N.D. -1.2 -1.2
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