Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS15625 and HSERO_RS15630 are separated by 170 nucleotidesHSERO_RS15630 and HSERO_RS15635 are separated by 91 nucleotidesHSERO_RS15635 and HSERO_RS15640 overlap by 1 nucleotidesHSERO_RS15640 and HSERO_RS15645 are separated by 111 nucleotides HSERO_RS15625: HSERO_RS15625 - glycosyltransferase family 1, at 3,569,677 to 3,570,249 _RS15625 HSERO_RS15630: HSERO_RS15630 - exodeoxyribonuclease III, at 3,570,420 to 3,571,187 _RS15630 HSERO_RS15635: HSERO_RS15635 - hypothetical protein, at 3,571,279 to 3,571,539 _RS15635 HSERO_RS15640: HSERO_RS15640 - phosphinothricin acetyltransferase, at 3,571,539 to 3,572,042 _RS15640 HSERO_RS15645: HSERO_RS15645 - acetyl-CoA synthetase, at 3,572,154 to 3,574,040 _RS15645
Group Condition HSERO_RS15625 HSERO_RS15630 HSERO_RS15635 HSERO_RS15640 HSERO_RS15645
stress Cisplatin 0.003 mg/ml -0.5 -4.7 -1.6 -0.7 +0.1
carbon source succinate (C) -0.6 -5.2 -1.3 -0.3 +0.0
stress Fusidic 0.025 mg/ml -0.8 -5.0 -0.3 -0.8 +0.1
carbon source D-Lactate (C) -0.4 -5.1 -1.3 -0.1 +0.0
carbon source m-Inositol (C) -0.9 -5.1 -0.5 -0.1 -0.1
carbon source pyruvate (C) -0.7 -5.0 -0.8 -0.2 -0.0
carbon source L-Lactate (C) -0.5 -5.0 -1.0 -0.3 +0.2
carbon source D-Galacturonic Acid (C) -0.5 -5.1 -0.6 -0.4 -0.0
carbon source D-Gluconic Acid (C) -0.3 -5.0 -1.0 -0.2 -0.1
carbon source D-Glucose-6-Phosphate (C) -0.5 -5.0 -0.6 -0.3 -0.1
carbon source a-Ketoglutaric (C) -0.6 -5.1 -0.6 +0.2 -0.1
carbon source D,L-Lactate (C) -0.3 -4.9 -0.8 +0.0 -0.1
carbon source a-Ketoglutaric (C) -0.6 -5.0 -0.3 -0.0 -0.2
carbon source L-Asparagine (C) -0.2 -5.2 -0.6 -0.1 +0.1
carbon source Glycerol (C) -0.4 -5.0 -0.5 -0.2 -0.1
carbon source D-Sorbitol (C) -0.4 -5.1 -0.6 -0.1 +0.1
carbon source L-Malic (C) -0.6 -5.0 -0.5 -0.0 +0.0
carbon source D-Lactate (C) -0.3 -5.2 -0.6 +0.0 +0.0
carbon source L-Malic (C) -0.3 -5.2 -0.4 -0.3 +0.2
carbon source L-Lactate (C) +0.1 -5.1 -0.8 -0.3 -0.0
carbon source D-Galacturonic Acid (C) -0.5 -5.0 -0.4 -0.2 +0.2
carbon source pyruvate (C) -0.3 -5.0 -0.5 -0.2 +0.1
stress Nickel (II) chloride 0.6 mM -0.5 -4.9 -0.4 -0.2 +0.2
carbon source D-Mannose (C) -0.5 -5.0 -0.2 +0.2 -0.1
stress Cobalt chloride 0.2 mM -0.3 -5.0 +0.3 -0.7 +0.2
carbon source D-Galactose (C) -0.3 -4.9 -0.8 +0.3 +0.1
carbon source Xylitol (C) -0.7 -4.7 -0.5 +0.3 +0.1
stress nitrite 20 mM -0.5 -4.9 +0.2 -0.3 +0.1
carbon source L-Arabinose (C) -0.6 -4.7 +0.4 -0.5 +0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -1.1 +6.4 -0.4 +0.1
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