Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS15485	HSERO_RS15490	HSERO_RS15495	HSERO_RS15500	HSERO_RS15505
carbon source	D-Xylose (C)	-0.3	-0.1	-1.1	-0.4	-0.3
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.7	-0.3	-0.5	+0.0	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.7	-0.0	-0.7	-0.1	-0.5
carbon source	D-Glucose-6-Phosphate (C)	-0.3	-0.2	-0.1	-0.1	-1.0
plant	Control soil assay; outgrowth in LB	+0.2	-0.5	+0.3	-0.4	-0.7
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	+0.1	-0.3	+0.2	-0.3	-0.7
plant	Control soil assay; outgrowth in LB	-0.5	+0.3	+0.0	-0.1	-0.6
micoeukaryotes	C.elegans, mixed culture-1	-0.5	+0.3	-0.5	+0.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	+0.1	-0.2	+0.4	-0.8
carbon source	Xylitol (C)	-0.4	-0.5	+0.5	+0.0	-0.1
stress	Fusidic 0.025 mg/ml	-0.5	-0.0	+0.2	-0.3	+0.4
carbon source	L-Arabinose (C)	+0.4	+0.2	-0.5	+0.1	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.5	+0.0	+0.2	-0.3	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	+0.2	+0.4	-0.7	+0.1	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	+0.2	-0.3	-0.0	-0.4
vitamin	No vitamins t1	+0.7	-0.1	-0.3	+0.3	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5	+0.0	+0.8	+0.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	-0.3	+0.0	+0.2	+1.1
carbon source	D-Galactose (C)	+0.3	+0.3	+0.6	+0.0	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	+0.9	-0.1	+0.2	+0.0
agar plate interaction control	Taped volatile agar plate with no fungus	+0.4	+0.2	-0.3	+0.1	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.9	-0.2	+0.3	+0.2	+0.1
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+1.1	+0.4	-0.0	-0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.6	-0.1	+0.6	+0.1	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	+0.1	+0.1	+0.4	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	+0.2	+0.3	+0.2	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	+0.4	+0.4	-0.1	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.0	+1.1	-0.1	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.8	+0.4	+0.5	-0.1	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	+0.3	+1.9	+0.1	+1.7