Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS15285	HSERO_RS15290	HSERO_RS15295	HSERO_RS15300	HSERO_RS15305
stress	Fusidic 0.025 mg/ml	-0.2	-0.1	-0.3	+0.3	-0.8
carbon source	D-Sorbitol (C)	+0.1	-0.5	-0.5	+0.0	-0.2
carbon source	L-Arabinose (C)	+0.2	-0.4	+0.1	-0.3	-0.3
stress	Cisplatin 0.003 mg/ml	+0.4	-0.5	+0.1	+0.0	-0.5
stress	sodium fluoride 100 mM	-0.3	-0.5	+0.5	+0.0	-0.1
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.6	-0.4	+0.5	-0.0	+0.2
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.6	+0.0	+0.6	+0.0	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	+0.4	-0.5	+0.2	-0.1
agar plate interaction control	Taped volatile agar plate with no fungus	+0.1	-0.6	+0.5	+0.1	+0.0
stress	Sisomicin 0.125 mg/ml	+0.3	-0.3	-0.1	+0.3	+0.2
agar plate interaction control	Taped volatile agar plate with no fungus	-0.2	+0.0	+0.4	-0.3	+0.4
supernatant control	Vogels_fungal_media 0.1X	-0.2	+0.0	+0.3	-0.1	+0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.3	+0.5	+0.4	-0.2	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.1	+0.6	+0.3	+0.2	-0.1
supernatant control	Vogels_fungal_media 0.1X	+0.0	-0.2	+0.5	+0.1	+0.5
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.0	-0.0	+1.3	-0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.0	+0.7	-0.1	+0.3	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.2	+1.0	-0.1	+0.1
control	NoPredeControl	-0.1	+0.7	+0.2	+0.1	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.1	+0.3	+0.1	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	+0.6	+0.1	+0.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	+0.6	+0.4	+0.1	+0.1
carbon source	Carbon source 2-Deoxy-D-Ribose 5 mM	+0.2	+0.3	+0.4	+0.3	+0.2
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	+0.3	+0.2	+0.3	+0.3	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	+0.1	+0.4	+0.3	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	-0.0	+1.2	+0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.4	+0.8	-0.1	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	+0.1	+1.1	+0.0	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	+0.2	+1.2	+0.4	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	+0.4	+0.9	+0.1	-0.0