Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS15220	HSERO_RS15225	HSERO_RS15230	HSERO_RS15235	HSERO_RS15240
plant	Control soil assay; outgrowth in LB	-0.4	-0.1	-0.4	+0.3	-1.1
carbon source	D-Xylose (C)	-0.3	-0.7	+0.1	+0.2	-0.7
carbon source	Carbon source 2-Deoxy-D-Ribose 5 mM	-0.3	+0.4	-0.0	-0.1	-1.3
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.2	+0.5	-0.5	-0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.2	-0.2	+0.6	-0.6
micoeukaryotes	Dictyostellum sp.mixed culture-1	-0.7	-0.0	+0.2	-0.2	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	-0.0	+0.1	+0.4	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.2	-0.3	-0.4	+0.5	+0.3
supernatant control	Vogels_fungal_media; pH 5.5	-0.2	-0.2	-0.1	+0.2	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	-0.4	-0.2	+0.2	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.5	+0.2	+0.4	+0.5
nutrient	casaminos	+0.1	+0.2	+0.2	+0.5	-0.5
stress	Cisplatin 0.003 mg/ml	+0.2	-0.1	-0.1	-0.3	+0.9
carbon source	D-Lactate (C)	+0.3	-0.4	+0.1	+0.3	+0.5
nitrogen source	L-Proline (N)	+0.3	-0.1	-0.1	-0.2	+1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	+0.8	-0.1	-0.4	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.4	-0.2	+0.2	+0.9	-0.1
control	NoPredeControl	+0.1	+0.5	+0.2	+0.8	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-0.1	+0.1	+0.4	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	+0.9	-0.1	+0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	+0.1	+0.6	+0.7	-0.1
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	+0.2	-0.1	+0.0	+0.6	+0.8
agar plate interaction control	Taped volatile agar plate with no fungus	+0.4	+0.1	-0.2	+0.6	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.0	-0.0	+0.2	+0.8	+0.7
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.1	+0.2	-0.1	+0.3	+1.3
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	+0.2	-0.1	+0.0	+0.5	+1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.4	+0.1	+0.2	+0.4	+0.7
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+0.7	+0.4	-0.2	+0.2	+0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	+0.7	+0.4	+0.2	+1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.0	+0.3	+0.4	+1.6