Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS15170 and HSERO_RS15175 are separated by 36 nucleotidesHSERO_RS15175 and HSERO_RS15180 are separated by 41 nucleotidesHSERO_RS15180 and HSERO_RS15185 are separated by 194 nucleotidesHSERO_RS15185 and HSERO_RS15190 overlap by 4 nucleotides HSERO_RS15170: HSERO_RS15170 - membrane protein, at 3,441,733 to 3,442,095 _RS15170 HSERO_RS15175: HSERO_RS15175 - phosphoserine phosphatase, at 3,442,132 to 3,443,016 _RS15175 HSERO_RS15180: HSERO_RS15180 - transcription-repair coupling factor, at 3,443,058 to 3,446,495 _RS15180 HSERO_RS15185: HSERO_RS15185 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 3,446,690 to 3,447,454 _RS15185 HSERO_RS15190: HSERO_RS15190 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 3,447,451 to 3,447,954 _RS15190
Group Condition HSERO_RS15170 HSERO_RS15175 HSERO_RS15180 HSERO_RS15185 HSERO_RS15190
stress Cisplatin 0.003 mg/ml -0.4 N.D. -3.4 N.D. N.D.
carbon source L-Malic (C) -0.3 N.D. -1.1 N.D. N.D.
supernatant control Vogels_fungal_media; pH 5.5 -0.6 N.D. -0.8 N.D. N.D.
carbon source m-Inositol (C) -0.4 N.D. -0.9 N.D. N.D.
carbon source L-Fucose (C) -0.9 N.D. -0.4 N.D. N.D.
carbon source L-Glutamine (C) -0.2 N.D. -1.0 N.D. N.D.
carbon source D-Lactate (C) -0.5 N.D. -0.6 N.D. N.D.
carbon source L-Malic (C) -0.1 N.D. -1.0 N.D. N.D.
carbon source m-Inositol (C) -0.2 N.D. -0.9 N.D. N.D.
stress nitrate 200 mM -0.6 N.D. -0.5 N.D. N.D.
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days -0.2 N.D. -0.9 N.D. N.D.
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days -0.5 N.D. -0.5 N.D. N.D.
stress sodium fluoride 100 mM -1.0 N.D. +0.0 N.D. N.D.
carbon source D-Glucose (C) +0.3 N.D. -1.2 N.D. N.D.
carbon source D-Glucose-6-Phosphate (C) +0.2 N.D. -1.1 N.D. N.D.
carbon source pyruvate (C) +0.2 N.D. -1.0 N.D. N.D.
carbon source succinate (C) +0.2 N.D. -0.8 N.D. N.D.
carbon source succinate (C) +0.3 N.D. -0.7 N.D. N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 N.D. -0.8 N.D. N.D.
carbon source D-Glucose-6-Phosphate (C) +0.5 N.D. -0.8 N.D. N.D.
vitamin No vitamins t2 +0.6 N.D. -0.9 N.D. N.D.
carbon source L-Asparagine (C) +0.4 N.D. -0.7 N.D. N.D.
vitamin With vitamins t2 +0.5 N.D. -0.8 N.D. N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 N.D. -0.6 N.D. N.D.
carbon source D-Galactose (C) +0.5 N.D. -0.7 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 N.D. -0.4 N.D. N.D.
vitamin With vitamins t1 +0.8 N.D. -0.6 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 N.D. -0.5 N.D. N.D.
vitamin No vitamins t1 +0.9 N.D. -0.6 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.8 N.D. -0.0 N.D. N.D.
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