Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 244 experiments or choose conditions or try the comparative fitness browser

500 ntHSERO_RS15010 and HSERO_RS15015 are separated by 26 nucleotidesHSERO_RS15015 and HSERO_RS15020 are separated by 15 nucleotidesHSERO_RS15020 and HSERO_RS15025 are separated by 111 nucleotidesHSERO_RS15025 and HSERO_RS15030 are separated by 276 nucleotides HSERO_RS15010: HSERO_RS15010 - avirulence D protein, at 3,408,527 to 3,409,393 _RS15010 HSERO_RS15015: HSERO_RS15015 - ATP-binding protein, at 3,409,420 to 3,410,097 _RS15015 HSERO_RS15020: HSERO_RS15020 - FMN-dependent NADH-azoreductase, at 3,410,113 to 3,410,739 _RS15020 HSERO_RS15025: HSERO_RS15025 - LysR family transcriptional regulator, at 3,410,851 to 3,411,702 _RS15025 HSERO_RS15030: HSERO_RS15030 - polyhydroxyalkanoate synthesis repressor PhaR, at 3,411,979 to 3,412,545 _RS15030
Group Condition HSERO_RS15010 HSERO_RS15015 HSERO_RS15020 HSERO_RS15025 HSERO_RS15030
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -0.5 -0.4 -0.3 N.D.
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.2 -0.5 -0.1 -0.2 N.D.
carbon source Carbon source Phenylacetic 5 mM +0.0 -0.2 -0.2 -0.6 N.D.
r2a control R2A control -0.2 -0.3 -0.1 -0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 -0.3 -0.2 -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.2 +0.6 -0.4 -0.7 N.D.
micoeukaryotes Dictyostellum sp.mixed culture-1 +0.0 -0.5 -0.3 +0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.6 +0.3 -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -0.6 +0.5 -0.3 N.D.
carbon source Carbon source D-Glucose 20 mM +0.2 -0.3 -0.1 -0.4 N.D.
carbon source Glycerol (C) -0.2 +0.2 -0.1 -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.0 -0.3 -0.2 +0.3 N.D.
vitamin With vitamins t1 -0.2 -0.3 +0.5 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.2 -0.5 +0.2 -0.0 N.D.
control NoPredeControl +0.1 -0.8 -0.1 +0.8 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +0.3 -0.3 -0.3 +0.3 N.D.
carbon source L-Arabinose (C) -0.4 +0.6 +0.2 -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.2 -0.4 +0.0 +0.3 N.D.
carbon source L-Asparagine (C) -0.1 +0.3 +0.3 -0.3 N.D.
supernatant control Vogels_fungal_media; pH 5.5 +0.3 +0.4 -0.4 -0.1 N.D.
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.4 +0.1 +0.3 +0.2 N.D.
carbon source a-Ketoglutaric (C) -0.2 +0.5 -0.1 +0.1 N.D.
plant Control soil assay; outgrowth in LB +0.1 +0.3 +0.3 -0.3 N.D.
carbon source D-Glucose (C) -0.2 +0.8 -0.2 +0.1 N.D.
carbon source L-Arabinose (C) -0.3 +0.1 +0.3 +0.3 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.0 +0.3 -0.2 +0.4 N.D.
stress Fusidic 0.025 mg/ml -0.2 +0.2 +0.2 +0.5 N.D.
carbon source L-Proline (C) +0.0 +0.3 +0.0 +0.6 N.D.
carbon source Glycerol (C) +0.0 +0.4 +0.3 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.1 -0.1 +1.3 N.D.
remove
HSERO_RS15010
plot		 remove
HSERO_RS15015
plot		 remove
HSERO_RS15020		 remove
HSERO_RS15025
plot		 remove
HSERO_RS15030
plot