Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS14825	HSERO_RS14830	HSERO_RS14835	HSERO_RS14840	HSERO_RS14845
carbon source	m-Inositol (C)	+0.1	-0.3	-1.5	-2.2	-3.1
carbon source	m-Inositol (C)	-0.5	-0.3	-1.1	-3.0	-1.9
stress	Sisomicin 0.125 mg/ml	-0.4	-0.7	-5.2	+0.1	+0.3
stress	Lomefloxacin 0.012 mM	-0.3	-0.7	-3.2	-1.2	-0.1
carbon source	L-mannose (C)	-0.3	-0.2	-1.1	-1.9	-1.3
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.1	-1.0	-1.6	-1.3	-0.6
carbon source	D-Mannose (C)	-0.4	+0.2	-1.5	-1.8	-0.7
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.6	-1.0	-1.4	-0.9	-0.2
carbon source	D-Galacturonic Acid (C)	-0.4	-0.0	-2.9	-0.4	-0.3
vitamin	With vitamins t2	+0.1	-0.2	-2.1	-1.1	-0.6
carbon source	D-Mannose (C)	-0.2	-0.4	-1.0	-1.8	-0.5
carbon source	Xylitol (C)	-0.1	+0.2	-1.0	-1.4	-1.3
carbon source	L-mannose (C)	+0.2	-0.2	-0.7	-2.1	-0.8
carbon source	L-Asparagine (C)	-0.0	-0.2	-1.9	-0.8	-0.5
carbon source	D-Glucose-6-Phosphate (C)	-0.2	-0.2	-0.1	-1.9	-1.1
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.0	-0.8	-1.0	-0.7	-0.7
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.6	-0.3	-2.1	-1.4	+0.1
carbon source	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM	+0.1	+0.1	-0.1	-2.3	-0.9
nutrient	L-Histidine	-0.1	+0.2	-1.8	-1.0	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	+0.3	-1.8	-1.3	-0.4
stress	Nickel (II) chloride 0.6 mM	+0.1	-0.2	-3.7	+0.5	+0.5
stress	Fusidic 0.025 mg/ml	+0.5	-0.3	-3.3	+0.0	+0.4
stress	Cisplatin 0.003 mg/ml	-0.3	-0.0	-4.5	+0.9	+1.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.5	+0.4	-1.3	-1.4
carbon source	D,L-Lactate (C)	+0.4	+0.5	-0.6	-1.3	-0.5
stress	Cobalt chloride 0.2 mM	+0.2	-0.5	-2.2	+0.3	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	+0.1	+1.8	-1.9	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	+0.4	+1.6	-1.2	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	-0.2	+2.1	-1.2	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.2	+2.8	-1.2	-0.3