Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS14780 and HSERO_RS14785 are separated by 26 nucleotidesHSERO_RS14785 and HSERO_RS14790 are separated by 132 nucleotidesHSERO_RS14790 and HSERO_RS14795 are separated by 44 nucleotidesHSERO_RS14795 and HSERO_RS14800 are separated by 138 nucleotides HSERO_RS14780: HSERO_RS14780 - ribosome-associated GTPase EngA, at 3,355,296 to 3,356,639 _RS14780 HSERO_RS14785: HSERO_RS14785 - serine/threonine protein kinase, at 3,356,666 to 3,357,865 _RS14785 HSERO_RS14790: HSERO_RS14790 - membrane protein, at 3,357,998 to 3,358,642 _RS14790 HSERO_RS14795: HSERO_RS14795 - histidyl-tRNA synthetase, at 3,358,687 to 3,360,042 _RS14795 HSERO_RS14800: HSERO_RS14800 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 3,360,181 to 3,361,443 _RS14800
Group Condition HSERO_RS14780 HSERO_RS14785 HSERO_RS14790 HSERO_RS14795 HSERO_RS14800
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM N.D. N.D. -1.4 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -1.3 N.D. N.D.
vitamin With vitamins t2 N.D. N.D. -1.3 N.D. N.D.
vitamin No vitamins t2 N.D. N.D. -1.1 N.D. N.D.
carbon source Carbon source D-Glucose 20 mM N.D. N.D. -1.1 N.D. N.D.
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM N.D. N.D. -1.0 N.D. N.D.
stress A22 0.02 mg/ml N.D. N.D. -1.0 N.D. N.D.
carbon source L-Fucose (C) N.D. N.D. -1.0 N.D. N.D.
nutrient L-Histidine N.D. N.D. -1.0 N.D. N.D.
stress nitrate 200 mM N.D. N.D. -1.0 N.D. N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. N.D. -1.0 N.D. N.D.
supernatant control Vogels_fungal_media; pH 5.5 N.D. N.D. -0.9 N.D. N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. N.D. -0.9 N.D. N.D.
carbon source Carbon source D-Glucose 20 mM N.D. N.D. -0.9 N.D. N.D.
stress A22 0.04 mg/ml N.D. N.D. -0.8 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -0.8 N.D. N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. N.D. -0.8 N.D. N.D.
carbon source D-Glucose (C) N.D. N.D. -0.8 N.D. N.D.
nutrient Min media with glucose N.D. N.D. -0.8 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -0.8 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.8 N.D. N.D.
carbon source Carbon source Phenylacetic 5 mM N.D. N.D. -0.8 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. -0.7 N.D. N.D.
plant Control soil assay; outgrowth in LB N.D. N.D. -0.7 N.D. N.D.
nutrient L-Histidine N.D. N.D. -0.7 N.D. N.D.
nutrient L-Serine N.D. N.D. -0.7 N.D. N.D.
carbon source succinate (C) N.D. N.D. +0.8 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. +1.1 N.D. N.D.
carbon source L-Fucose (C) N.D. N.D. +1.1 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. +2.2 N.D. N.D.
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